Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120754.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    30   0.36 
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.9  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   2.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   4.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   4.5  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   4.5  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.9  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   7.8  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   7.8  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   7.8  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 185 NHPRLNIHFHQSADAVLEGVRAGVKPPLSSEAPSAYLTPSSLGMAKGVSLPY-FQVND 355
           N P   + F      ++ GV     PP SS+ P  Y+       AKG+S  Y   VND
Sbjct: 16  NKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 251 GVKPPLSSEAPSAY--LTPSSLGMAKGVSLPYFQVNDESQASRLISRHSTH 397
           GV P   ++A +A+  LTP   G +   SLPY Q   +  + R   +  +H
Sbjct: 195 GVDPSTMADAHNAHSSLTPPQSGYSSMPSLPYLQQPFQIPSQRFSRQQQSH 245


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = -3

Query: 360 DSSFT*K*GSETPLAMPSDEGVRYADGASDDNGGFTPARTPSS 232
           +SSF    GS TPL    D G  YAD A+  N    PA TP +
Sbjct: 160 NSSFVGNSGSGTPL--DGDSGSFYADSANLTNREPYPAWTPEN 200


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 500 SNSKELDPQGFFYHRHP 550
           SN +E+   GF+YHR P
Sbjct: 147 SNREEISSSGFYYHRKP 163


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 129 SPAISATSTRSSNPRFHXPTTPDLTSIS 212
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 692 LGGRERSLNRCREKSSFVVLTNRPDVVVQYG 600
           LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 124 LGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 474 KVKIADNNLVTQRNWTLKVSSIIGTRVYVFDPSCYFSTPPFDTVL 608
           K K+ D   V ++  T+  +S   T+ +V +   YF   PF+ V+
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVV 652


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 300 PRHWAWLKGFRSLIFK*MMNHKLRALLVVIPRILRSPPPTHPL 428
           P +   LK   S IF   + H  R  L V+P++LRS   +H L
Sbjct: 739 PNNVILLKLVTSEIFIRSIKHVFRNFLAVVPQVLRSHLLSHLL 781


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 363 KLRALLVVIPRILRSPPPTHPLIEDV 440
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 170 PIPXTNHPRLNIHFHQSADAVLEGVRAGV--KPPLSSEAPSAYLTPS 304
           P    NHP+ +I FH   + V + ++A +  KP ++S+A +A +  S
Sbjct: 28  PYTARNHPQFSIWFHNDFEPV-KDLKALLKDKPQIASQAVTALVNVS 73


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 358 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 444
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 582 STP-PFDTVLYDNIRTVRKDNKT 647
           +TP P D +L +N+RTVRK   +
Sbjct: 72  TTPTPRDEILLENVRTVRKQRSS 94


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 692 LGGRERSLNRCREKSSFVVLTNRPDVV 612
           LG   RS  RC  KSSF+  + + DVV
Sbjct: 39  LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,303
Number of Sequences: 5004
Number of extensions: 53884
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)