Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120754.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.87
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 31 1.2
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 29 4.7
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 28 8.1
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 8.1
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 8.1
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 8.1
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 135 AISATSTRSSNPRFHXPTTP 194
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 117 IKLPSPAISATSTRSSNPRFHXPTTPDLTSISINPLTPY*KEFAPG*SLRCHQRL 281
I PSPAI+ T ++N +H P DL+ P T EF+PG + +CH+++
Sbjct: 331 IDQPSPAIANTIQVATNQLYH-PQQVDLSKEK-QPST----EFSPGQNSKCHKKV 379
>02_01_0121 +
890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 200 NIHFHQSADAVLEGVRAGVKPPLSSEAPSAY 292
N FH+ A V A + PP S APS +
Sbjct: 127 NFEFHKERGASARSVTAAIVPPFSKPAPSKW 157
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 167 SPIPXTNHPRLNIHFHQSADAVLEGVRAGVKPPL 268
S I N +IHF S +A+ GVRAG+ P +
Sbjct: 174 SKIKLVNDLLESIHFIASIEAMFLGVRAGIHPSI 207
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 552 VYVFDPSCYFSTPPFDTVLYD-NIRTVRK-DNKTALLSASIQAS 677
V + D SC TP FDT + + N+ T K + A+L SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 387 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 476
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 126 PSPAISATSTRSSNPRFHXPTTPDLTSISINPLTPY*KEFAP 251
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,904,829
Number of Sequences: 37544
Number of extensions: 408374
Number of successful extensions: 1256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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