Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120754.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    29   3.6  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   4.8  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     28   8.3  

>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 4   TSHS*PLLDYC*RHS*RIQCAGHPFIRSHYYWRSRPY--ASSYPPLR 138
           T +   LL YC     R   AGHPF+   Y +  R Y   +S  PLR
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 126 PSPAISATSTRSSN-PRFHXPTTPDLTSISINPLT 227
           P   IS TS  SS  PR H PTTP  T  +  P T
Sbjct: 257 PQTTISITSIISSAIPRGHLPTTPSTTPQATPPST 291


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 468  DYKVKIADNNLVTQRNW-TLKVSSIIG--TRVYVFDPSCYFSTPPFDTVLYDNIRTVRKD 638
            DY++  + + LV    W TL+   +    T +Y F  +     PP D    +NIR+ R+ 
Sbjct: 1571 DYRITTSTSQLVKTLGWETLEDRRLRNQSTLLYKFHNNLIHCQPPDDLRRTENIRSSRRH 1630

Query: 639  NKT 647
            ++T
Sbjct: 1631 SRT 1633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,550
Number of Sequences: 59808
Number of extensions: 433104
Number of successful extensions: 1194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)