Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120754.seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain (pr...    29   2.4  
U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain (pr...    29   2.4  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   4.2  
U00064-3|AAB52706.2|  375|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024751-12|ABF71717.1|  301|Caenorhabditis elegans Collagen pro...    28   5.5  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U23178-5|AAN63417.1|  439|Caenorhabditis elegans Vh1 dual-specif...    28   7.3  
U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1 dual-specif...    28   7.3  
U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1 dual-specif...    28   7.3  
AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like phos...    28   7.3  

>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 182 TNHPRLNIHFHQSADAVLEGVRAGVKPP-LSSEAPSAYLTPSSLGMAKGVS 331
           TNHP LN H  +   A++ G   G  PP L S   +A  TP   G A  +S
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMS 197


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 182 TNHPRLNIHFHQSADAVLEGVRAGVKPP-LSSEAPSAYLTPSSLGMAKGVS 331
           TNHP LN H  +   A++ G   G  PP L S   +A  TP   G A  +S
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMS 197


>U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform a protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/88 (22%), Positives = 33/88 (37%)
 Frame = +2

Query: 74  PSSARITIGGLALMHQATLPCDLGYINPIIKSPIPXTNHPRLNIHFHQSADAVLEGVRAG 253
           P+S    I  + L     L   +   NP I  P+  ++    + H       +  G    
Sbjct: 417 PTSPHSIIQNVPLPTSPDLKKPVNNSNPFISDPLTPSSSSSSSSHNLSHVTKITVGTIGN 476

Query: 254 VKPPLSSEAPSAYLTPSSLGMAKGVSLP 337
           +  P SS APS+Y+    +  +   S P
Sbjct: 477 LDTPSSSAAPSSYIPRPVVSTSTSFSHP 504


>U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform b protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/88 (22%), Positives = 33/88 (37%)
 Frame = +2

Query: 74  PSSARITIGGLALMHQATLPCDLGYINPIIKSPIPXTNHPRLNIHFHQSADAVLEGVRAG 253
           P+S    I  + L     L   +   NP I  P+  ++    + H       +  G    
Sbjct: 433 PTSPHSIIQNVPLPTSPDLKKPVNNSNPFISDPLTPSSSSSSSSHNLSHVTKITVGTIGN 492

Query: 254 VKPPLSSEAPSAYLTPSSLGMAKGVSLP 337
           +  P SS APS+Y+    +  +   S P
Sbjct: 493 LDTPSSSAAPSSYIPRPVVSTSTSFSHP 520


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 336 GSETPLAMPSDEGVRYADGASDDNGGFTPARTPSSTASAD 217
           G   P  +P D G + +DG    +GG  P   P    S D
Sbjct: 249 GKAGPPGLPGDPGEKGSDGLPGPHGGTGPRGPPGQPGSCD 288


>U00064-3|AAB52706.2|  375|Caenorhabditis elegans Hypothetical
           protein ZC155.4 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 417 THPLIEDVVMATNQAIIDYKVKIADNNLV---TQRNWTLKVS 533
           TH L   V+++    I  YKVK+AD  ++   T RNW L  +
Sbjct: 238 THNLYSKVLVSGFNPIDTYKVKMADPKILTGFTWRNWELSTT 279


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 236 EGVRAGVKPPLSSEAPSAYLTPSSLGMAKGVSLPYFQVNDESQASRLISRHSTHT 400
           EG    ++   SS +PS + TP  +G    VS    Q +  S +S   +   T T
Sbjct: 734 EGTTLSIESTESSASPSDFTTPDFIGFTSSVSRTSEQYSSSSPSSDTTTMDVTST 788


>AC024751-12|ABF71717.1|  301|Caenorhabditis elegans Collagen
           protein 47 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 229 GVSGLMEMDVKSGVVGXWNRGFDDRVDVAEIAGEGSLMHKGETANSNASG*RGG 68
           G  GL   D   G  G    G  D V +  +  +G +  +GE  N  + G RGG
Sbjct: 167 GPPGLAGQDGLDGAPGEPGVGGMDAVKIVSV--DGKIGRRGEAGNKGSKGSRGG 218


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 109 PYASSYPPLRSRLHQPDHQIPDS 177
           P +S +PPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>Z68012-5|CAA92019.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.5 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 229 GVSGLMEMDVKSGVVGXWNRGFDDRVDVAEIA 134
           G S L  M+ +S ++  W R  DDRV+    A
Sbjct: 323 GSSSLSNMNAQSSLMVCWKRSTDDRVNAQRFA 354


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 263 PLSSEAPSAYLTPSSLGMAKGVSLPYFQVNDESQASRLISR 385
           P+SS  P    TP         SLPY Q+N+    +R  +R
Sbjct: 493 PMSSPPPPLPRTPQPNNGLPNASLPYNQINNAGSFTRTAAR 533


>U23178-5|AAN63417.1|  439|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform c
           protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 IKLPSPAISATSTRSSNPRFHXPTTPDLTSISINPLTPY 233
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 340 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 378


>U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform b
           protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 IKLPSPAISATSTRSSNPRFHXPTTPDLTSISINPLTPY 233
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 444 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 482


>U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform a
           protein.
          Length = 657

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 IKLPSPAISATSTRSSNPRFHXPTTPDLTSISINPLTPY 233
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 495 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 533


>AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like
           phosphatase 1 protein.
          Length = 657

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 IKLPSPAISATSTRSSNPRFHXPTTPDLTSISINPLTPY 233
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 495 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,987,181
Number of Sequences: 27780
Number of extensions: 302323
Number of successful extensions: 1002
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)