Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120754.seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47170.1 68416.m05122 transferase family protein low similari...    33   0.24 
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    30   1.3  
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    30   1.7  
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    28   6.8  
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At1g59970.1 68414.m06755 matrixin family protein similar to SP|P...    27   9.0  
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei...    27   9.0  

>At3g47170.1 68416.m05122 transferase family protein low similarity
           to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
           cuspidata GI:6746554; contains Pfam profile PF02458
           transferase family
          Length = 468

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 357 NHKLRALLVVIPRILRSPP-PTHPLIEDVVMATNQAIIDYK-VKIADNNLVTQRNWTLKV 530
           N K    LV + +   SP  PT  ++ +++  T++ I   K + I D NL  ++   +K+
Sbjct: 222 NDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKI 281

Query: 531 SSIIGTRVYVFDPSC 575
           +++     YV+   C
Sbjct: 282 TTVEVLAAYVWRARC 296


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 73  PFIRSHYYWRSRPYASSYPPLRSR---LHQPDHQIPDSIXQPPQT*HPFP 213
           PF  S     +RP+ +S PP  S+   + QP       + QPP T  P P
Sbjct: 488 PFSMSQPSSTARPFPASQPPAASKSFPISQPPTTSKPFVSQPPNTSKPMP 537


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 112 YASSYPPLRSRLHQPDHQIPDSIXQPPQT 198
           Y SS+P +RS  H P +  P +   PP T
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTT 469


>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 67  GHPFIRSHYYWRSR-P-YASSYPPLRSRLHQPDHQIP 171
           G P   +HYYWR   P Y SSY  +   + + ++ +P
Sbjct: 427 GEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLP 463


>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1068

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 47  VEGFNVLATPSSARITIGGLALMHQATL 130
           V GFN+LA  S  RI+  G  +MH   L
Sbjct: 461 VNGFNILADRSLVRISTDGHVVMHHYLL 488


>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1068

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 47  VEGFNVLATPSSARITIGGLALMHQATL 130
           V GFN+LA  S  RI+  G  +MH   L
Sbjct: 461 VNGFNILADRSLVRISTDGHVVMHHYLL 488


>At1g59970.1 68414.m06755 matrixin family protein similar to
           SP|P29136 Metalloendoproteinase 1 precursor (EC
           3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
           accession IPR001818: Matrixin
          Length = 360

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 321 LAMPSDEGVR--YADGASDDNGGFTPARTPSSTA--SAD*WK-WMLSL 193
           LA    EG++  Y    + D GG  P+R   ST   S   W+ WM+SL
Sbjct: 301 LAKDDIEGIQHLYGGNPNGDGGGSKPSRESQSTGGDSVRRWRGWMISL 348


>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
           contains Pfam PF00641: Zn-finger in Ran binding protein
           and others; contains Prosite PS00018: EF-hand
           calcium-binding domain; similar to Zinc finger protein
           265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
           musculus}
          Length = 849

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -2

Query: 193 GVVGXWNRGFDDRVDVAEIAGEGSLMHKGETANSNASG*RGGQH 62
           G +G    GFDD  D     G GS   +G        G  G +H
Sbjct: 784 GRMGSRRGGFDDEFDRKSSRGRGSGSFRGSNRGGRGGGGGGNRH 827


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,342
Number of Sequences: 28952
Number of extensions: 305664
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)