Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120752.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   3.4  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   5.9  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   7.8  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.8  

>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 46  TTDLCCTWPVCW*ATQKLIGCTTADGTKLKRAPTAILTFTKCT-FTLDKLKIKKLKNSTP 222
           TT    T  + W A +  +   T  G  L      IL   + + +TLDKLKI    NS P
Sbjct: 77  TTTSLSTAIIHW-AAKSYVSEATLKGNVLSLNTFNILGKKRLSQYTLDKLKIPDTNNSRP 135

Query: 223 AWWLAATTL 249
              L +TT+
Sbjct: 136 FANLESTTV 144


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 475 VVISTAHHIFALNFIKIRLARQKRDG 398
           V + T + IF +N +K+R  RQ  DG
Sbjct: 18  VALDTGYKIFQINPLKLRAQRQFNDG 43


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 269 ASTNDLEGIKICGIHGQKGVFNGGEDLTEWMAEDGTHAQICLSPV-SFLSRQSNFD 433
           ++ + L    + G+  QK  F G    +EW+  D T   IC S   S +S  S+F+
Sbjct: 251 STISTLSNDSLDGLSSQKNEFTGFNSNSEWIPND-TVDYICNSDASSVVSNLSDFE 305


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 343 FAAVKHTFLTVNATYFYSFQI 281
           F+  KH+F+ +  T FYSF +
Sbjct: 180 FSLQKHSFIVIYKTAFYSFYL 200


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 464 GNHDDPHAKRYPIFNYHTCYLIIHPTIFSKNLLKQTTLDTK 586
           G  +DP  + +   NY    LI HP +  + L++Q   D +
Sbjct: 247 GTENDPFIENFRYVNYRYMKLIFHP-LLDRFLIQQDWKDPR 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,280
Number of Sequences: 5004
Number of extensions: 60207
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)