Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120752.seq
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0568 + 17223924-17224190                                         29   2.7  
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602...    28   6.2  
07_03_0606 + 19912090-19913430                                         28   6.2  
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562...    28   6.2  

>04_03_0568 + 17223924-17224190
          Length = 88

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
 Frame = +1

Query: 205 LKNSTPAW------WLAATTLCLNS-HSRVHQRFGRNKN 300
           LKNST  W      WL+   +C+NS H  + +++ R KN
Sbjct: 48  LKNSTELWLVGGRLWLSYLAICINSRHRLLFEKYPRRKN 86


>08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,
            6027187-6027258,6027354-6027425,6027784-6027855,
            6027980-6028051,6028134-6028205,6028483-6028554,
            6028791-6028865,6028970-6029041,6029134-6029199,
            6029267-6029332,6029409-6029453,6029542-6029606,
            6029697-6030076,6030455-6030653,6030725-6030883,
            6030966-6031084,6031156-6031200,6031226-6031791,
            6031871-6032021,6032117-6032454,6033702-6033765,
            6034329-6034370,6035572-6035575,6035853-6036039,
            6037252-6037323,6037687-6037758,6037867-6037938,
            6038019-6038090,6038651-6038725,6038815-6038886,
            6038988-6039053,6039163-6039228,6039348-6039392,
            6039469-6039533,6039615-6039994,6040070-6040202,
            6040354-6040512,6040599-6040717,6040805-6041015,
            6041155-6041386,6041469-6041619,6041725-6042084
          Length = 1952

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 347  LTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHD 475
            +TEW   DG       S  S  SRQ   D +     + G +HD
Sbjct: 1004 ITEWQYRDGNSTN-SESTTSEFSRQKEIDPLTMSPTITGSSHD 1045


>07_03_0606 + 19912090-19913430
          Length = 446

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 45  DDGLVLYMAGVLVSNAKINWVYDGRRY 125
           D G  L   G + +N  + WVY+ RRY
Sbjct: 249 DTGCWLLNEGTMQANGSLYWVYEDRRY 275


>04_04_0802 -
           28155281-28155725,28155750-28156081,28156164-28156266,
           28156347-28156528,28156617-28156800,28156872-28156960,
           28157634-28157710,28157837-28157927,28158230-28158430
          Length = 567

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 404 SFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNYHTCY-LIIHPTIFSKNLLKQTTLD 580
           SF+S  SN  KI R+   R G    P+  R P      CY   + P +  K++++ T  D
Sbjct: 163 SFISSLSNDVKIIRQVPDRNGKTPYPYKMRIPRKCTAKCYENRVLPALLKKHVVQLTKFD 222

Query: 581 TKKSKVL 601
            + S  L
Sbjct: 223 YRVSNRL 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,469,193
Number of Sequences: 37544
Number of extensions: 379983
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)