Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120752.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57317| Best HMM Match : SSF (HMM E-Value=0)                         29   4.8  
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)             29   4.8  
SB_13621| Best HMM Match : DUF757 (HMM E-Value=7)                      28   6.3  
SB_42240| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
          Length = 389

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 78  LVSNAKINWVYDGRRYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVV 233
           L++ A +NW++   R +++T  NGN      Y   R     ++ ++ +++V+
Sbjct: 100 LIAGAYLNWLFVAGRLRVQTEHNGNALTLPDYFTHRFEDGSRVLRIFSALVI 151


>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 ACRPSRFCLASLILIKLSANMWCAVEITTTRTPSVIPSST 509
           ACR  +F + SL++I LS  + CA  +   +  + + ++T
Sbjct: 190 ACRAHKFAMFSLLMIILSILLMCASSLQEVKKSTTMKNAT 229


>SB_13621| Best HMM Match : DUF757 (HMM E-Value=7)
          Length = 136

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +2

Query: 416 RQSNFDKIERKYVVRGGNHDDPHAKRYPIFNYHTCYLIIHPTIFSKNLLKQTTLDTKKS 592
           R  NFDK+   Y++ G        ++  IF  HT   I      S  ++K  T  T ++
Sbjct: 37  RTKNFDKLSFLYLITGNMEKLKKMQKIAIFPIHTTVKIPSIISVSNKMIKSETRKTYRN 95


>SB_42240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 97  LIGCTTADGTKLKRAPTAILTFTKCTFTLDKLKIKKLKNSTPAWWLAATTLCLNSHS 267
           ++G T     K  R  T        T T  K + K    S   W +AATT C N ++
Sbjct: 121 VLGLTEQHEEKQVRVQTQYWGLKNNTKTNSKFEKKNAVTSIRTWVIAATTQCTNQYT 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,598,934
Number of Sequences: 59808
Number of extensions: 449012
Number of successful extensions: 1215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)