Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120752.seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    31   0.79 
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   3.2  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    28   5.5  
AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF016678-6|AAB66149.2|  236|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    27   9.7  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    27   9.7  
AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 335 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 490
           GGE + +   E G H +        LSR  N + IE+ +V+RG      HAK
Sbjct: 344 GGETIKQINQESGAHCE--------LSRDPNTNPIEKTFVIRGSEAQVEHAK 387


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 387 YACRPS-RFCLASLILIKLSANMWCAVEITTTRTPS 491
           + CRPS RFC+ +L ++ ++   +   ++T   TPS
Sbjct: 465 FICRPSVRFCMLNLYVVYIAIAFYGCSQLTPNLTPS 500


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 181 LDKLKIKKLKNSTPAWWLAATTLCLNSHSRVHQRFGRNKNMWH 309
           LD LKI  L N +P W     +  LN H RV Q   +N  + H
Sbjct: 339 LDSLKI--LSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIH 379


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 181 LDKLKIKKLKNSTPAWWLAATTLCLNSHSRVHQRFGRNKNMWH 309
           LD LKI  L N +P W     +  LN H RV Q   +N  + H
Sbjct: 339 LDSLKI--LSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIH 379


>AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical
           protein C04E12.5 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 75  VLVSNAKINWVYDGRRYKIETCTNGNFNVYKVYVYFRQIKNQKIEKLDASMVVSGDNVML 254
           V++S   I  + + R   +ETC N   N + + V       Q+++KL  S+++  D  +L
Sbjct: 195 VVISIPGIEEIVNNRAGVVETCPNFLINCFNIPVEKSLTIEQQMDKLYISIMLQKDIKVL 254

Query: 255 K 257
           K
Sbjct: 255 K 255


>AF016678-6|AAB66149.2|  236|Caenorhabditis elegans Hypothetical
           protein K07E8.3 protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 434 KIERKYVVRGGNHDDPHAKRYPIFNYHTCYLIIHPTIFSKNL--LKQTTLDTKKSKVLAS 607
           K+ +   VRGG  D  H KRYP    H C       IF+ N+  ++ TT+ T     +A+
Sbjct: 66  KLGQPCYVRGGRVDY-HDKRYPNRTGHDC------VIFNNNIAEIQITTVATNFVTPIAT 118

Query: 608 INGQRI 625
           +N  +I
Sbjct: 119 LNAPKI 124


>Z73969-19|CAJ43440.1|  548|Caenorhabditis elegans Hypothetical
           protein C12D8.1c protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 335 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 490
           GGE + +  +E G H ++   P        N D  E+ +V++GG     HAK
Sbjct: 295 GGETIKQINSESGAHCELSRDPTG------NAD--EKVFVIKGGKRAIEHAK 338


>Z73969-2|CAA98233.1|  611|Caenorhabditis elegans Hypothetical
           protein C12D8.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 335 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 490
           GGE + +  +E G H ++   P        N D  E+ +V++GG     HAK
Sbjct: 358 GGETIKQINSESGAHCELSRDPTG------NAD--EKVFVIKGGKRAIEHAK 401


>Z73969-1|CAA98232.1|  589|Caenorhabditis elegans Hypothetical
           protein C12D8.1a protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 335 GGEDLTEWMAEDGTHAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAK 490
           GGE + +  +E G H ++   P        N D  E+ +V++GG     HAK
Sbjct: 336 GGETIKQINSESGAHCELSRDPTG------NAD--EKVFVIKGGKRAIEHAK 379


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = +2

Query: 374 THAQICLSPVSFLSRQSNFDKIERKYVVRGGNHDDPHAKRYPIFNYHTCYLII---HPTI 544
           T +   L P  F     N +K+ R  V+R     +   +   ++      L +   HP  
Sbjct: 314 TASSSLLKPYVFDLNSLNDEKMRRSEVLRHRGVQETTGQLQNVYLAENAALSVIDEHPDR 373

Query: 545 FSKNLLKQTTLDTKKSKVLASI 610
           FSK  L++    TK  + LA+I
Sbjct: 374 FSKFFLRKAFFGTKNKRKLAAI 395


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
 Frame = +2

Query: 323 GVFNGGEDLTEWM-----AEDGTHAQICLSPV-SFLSRQSNFDKIERKYVVR----GGNH 472
           G FN   +LT++      +EDG       S + S  S    FD+I   + ++    GG+H
Sbjct: 96  GNFNNTSNLTQYKYSAQPSEDGNFLHFSYSAIKSCPSEWEPFDRIRGGWCIKVFRQGGSH 155

Query: 473 DDPH 484
           DD H
Sbjct: 156 DDAH 159


>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 106 CTTADGTKLKRAPTAILTFTKCTFTLDKLKIKKLKNSTPAWWLAATTLC 252
           C TA+ + LK   TA +   K   ++   +++        +W A+ TLC
Sbjct: 58  CLTAENSPLKNPLTATIVRGKTVHSMSLSRVQWDNRKKFEYWYASDTLC 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,294
Number of Sequences: 27780
Number of extensions: 340622
Number of successful extensions: 1143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)