Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120752.seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75760.1 68414.m08799 ER lumen protein retaining receptor fam...    27   9.0  

>At1g75760.1 68414.m08799 ER lumen protein retaining receptor family
           protein similar to SP|P33946 ER lumen protein retaining
           receptor 1 (KDEL receptor 1) {Bos taurus}; contains Pfam
           profile PF00810: ER lumen protein retaining receptor
          Length = 272

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
 Frame = -2

Query: 544 YCRVYY*IACMVVEDGITLGVRVVVISTAHHIFALNFIKI----RLARQKRDGRQAYLGV 377
           +C VY     ++ +  +    ++V   TAH++FAL   +         Q  D R   L  
Sbjct: 168 FC-VYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGIARFLSCAHWVLQVLDTRGRLLTA 226

Query: 376 RTIFGHPLGQVFAAVKHTFLTVNATYFYSFQIVGGR 269
                 P+  + + +  TF+  +  Y+Y   ++GG+
Sbjct: 227 LGYGFWPIMVLLSEIVQTFILADFCYYYVKSLMGGQ 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,394
Number of Sequences: 28952
Number of extensions: 305735
Number of successful extensions: 867
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)