Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120751.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    28   1.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   5.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.8  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 420 ESLHFNVYSINRNVVDVIKCSVTSVAQWNK 509
           + +H N YS+ R +V+      TSV  W+K
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDK 648


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -3

Query: 323 WYYSQSVYWLHKIIFNFCNRKTNLHCNL---TNSIFRRL--HLRLFAENNTRRRTCQCA 162
           +Y  Q  YW   I+ N+C RK   H  +    N +  +   H R FA+    RRT  C+
Sbjct: 451 FYPPQVQYWARAIMNNYC-RKDESHGGIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCS 508


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +3

Query: 330 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 428
           +L  CKH     C           CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,053
Number of Sequences: 5004
Number of extensions: 45854
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)