Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120747.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    29   0.83 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   5.9  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   5.9  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   7.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   7.8  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 529 CVISFSD--TNSILLVKLVTSGWNLLCIKANV 440
           CV+++S     S +L  L+  GW ++C  ANV
Sbjct: 8   CVLAYSGGLDTSCILAWLIEEGWEVICYMANV 39


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 545  PILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNF 652
            P+L T+    L   +D P ++++  +  +T  ++NF
Sbjct: 1411 PMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNF 1446


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 246 LFIAVYNFGDRSNFVAFDTFHF-YTLIYNIC 157
           L  A+  F DRS  VAF +F +   L+Y IC
Sbjct: 125 LIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 684  LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 568
            L I+  QLSFS+    S + SRL  +T+   +     TP
Sbjct: 889  LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 503 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 339
           L +++ +S+ KW+E +  K  C K+   N  S     K F + +G+   A +   +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 568  LVFCKQNGFSGNACVISFS---DTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALF 398
            L+    NGF+  +  I       TNS L VKL ++   + C+ +  + ++ ++  ++ L 
Sbjct: 886  LIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILG 945

Query: 397  LN 392
            L+
Sbjct: 946  LS 947


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 312 FHSFLNCLDFLNQIRPIRRFLDLFIAVYNFGDRSNF-VAFDTFHFYTLIYNICL*GV 145
           F S ++CLDF  Q +    F    + +  F D S+   AF T +  +L  NI L GV
Sbjct: 504 FESEISCLDFSAQFQIGVGFWSKQVMILTFSDNSSISCAFQT-NVPSLPRNIILEGV 559


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 160 NVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKPTNWPNLI 279
           N++   ++++ ++C    T+TEIVN   K  +  N  N++
Sbjct: 234 NLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNIL 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,664
Number of Sequences: 5004
Number of extensions: 53838
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)