Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120747.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.2  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   8.1  

>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 512 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 619
           +E  D SI   P +   N G L+C VDR SI ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = +3

Query: 276 DLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFI 455
           + KN+SS   Y T K K +L++ +   + + +  PL+E+FR  +   ++  +  +  + +
Sbjct: 275 ETKNMSSF--YWTKKYKKSLARSLREAAVIHLGVPLVELFRYLSGQHRVHCLPSNASSGL 332

Query: 456 HNRFHPLV 479
            +R  P V
Sbjct: 333 ASRPVPFV 340


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 243 KDPKTYELAEFDLKNLSSLESYETLKIKLALSKYM 347
           K  K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 90  KGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 678 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSP 538
           I +++LS S  T   +S++ ++LS L+   LST   STPS S      P
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKP 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,362,302
Number of Sequences: 59808
Number of extensions: 390966
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)