Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120747.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin...    32   0.41 
At5g06670.1 68418.m00753 kinesin motor protein-related                 30   1.3  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   2.2  
At2g46190.1 68415.m05743 hypothetical protein                          27   8.8  

>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
           finger (C3HC4-type RING finger) family protein similar
           to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
           GI:3790591; contains Pfam profiles PF00097: Zinc finger
           C3HC4 type (RING finger), PF04588: Hypoxia induced
           protein conserved region
          Length = 349

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 544 FSGNACVISFSDTNSILLVKLVTSGWNLLCIKANVL-NTTAAICRVSALFLNI 389
           F    C+  FSDT+ + L+ + +  ++L CI   +L N+T  +CR S    N+
Sbjct: 205 FDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNV 257


>At5g06670.1 68418.m00753 kinesin motor protein-related 
          Length = 992

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +3

Query: 189  TCQMQQSSNGHRNCKQR*KDPKTYELAEFDLKNLSSLESYETLKI---KLA----LSKYM 347
            TC MQQSS      +++  + + +E+ E  LK     E  E L+I   KLA     +K +
Sbjct: 785  TCHMQQSSQSPNKNEEKVIEAQAFEIEELKLKAAELSELNEQLEIRNKKLAEESSYAKEL 844

Query: 348  AMLSTLEMTQPLLEIFRNKADTRQIAA 428
            A  + +E+     EI R      ++AA
Sbjct: 845  ASAAAIELKALSEEIARLMNHNERLAA 871


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 633 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTQTP 499
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T  P
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGNP 98


>At2g46190.1 68415.m05743 hypothetical protein 
          Length = 210

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 471 PLVTNFTNKMEFVSLKLMTQAFPEN 545
           PL  NFT K+  +SL+    AFP N
Sbjct: 117 PLTVNFTKKISGLSLEFRCTAFPLN 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,813
Number of Sequences: 28952
Number of extensions: 271695
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)