Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120746.seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549...    29   2.6  
02_05_0612 + 30348495-30348995,30349679-30350023                       28   6.1  
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    28   8.1  
05_01_0100 + 670297-670525,671344-671559,671653-671758,671890-67...    28   8.1  
02_05_0680 - 30824652-30826010                                         28   8.1  
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916     28   8.1  
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41...    28   8.1  

>12_02_0942 -
           24653834-24654046,24654346-24654482,24654626-24654959,
           24655067-24655153,24655254-24655580
          Length = 365

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 311 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 490
           L ++M++++   +    N   C+S+ V D+ NN  +  RP + S    +    + D +  
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339

Query: 491 SD 496
            D
Sbjct: 340 DD 341


>02_05_0612 + 30348495-30348995,30349679-30350023
          Length = 281

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 432 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 289
           C R NA          R W +  +L +A+ +  M A  LA C+V  R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278


>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 553 CCAVW--LPLLCLARSWVGHVVAAKDD 479
           CC VW  LP++     ++GHV  A++D
Sbjct: 122 CCIVWTPLPVVSWLAPYIGHVGIARED 148


>05_01_0100 +
           670297-670525,671344-671559,671653-671758,671890-672229,
           672555-672839,672911-673033,673361-673435
          Length = 457

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -3

Query: 312 SCAVS-RRAFSQSCRAVSASLEXQSFRWQTK*AIGCFRQICVXHRQFLRQIVNFGNNIIC 136
           SC +     F Q   ++  ++  + FR +      C R IC   ++  +  +NF N +  
Sbjct: 209 SCEILLAEGFQQGFSSLPPTISEELFRLELADGDNCSRSICAEMKRVQKATINFDNTLSP 268

Query: 135 IH 130
            H
Sbjct: 269 AH 270


>02_05_0680 - 30824652-30826010
          Length = 452

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 CENARRETAQLANRMADIAQDVIAKPSNPQ 370
           C+N   E    AN M D   +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286


>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
          Length = 722

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/46 (17%), Positives = 24/46 (52%)
 Frame = +2

Query: 227 VCQRNDCXSSDAETARQDCENARRETAQLANRMADIAQDVIAKPSN 364
           +C+  D  + + E+++ +CE  R+    +A+ + +++ +      N
Sbjct: 431 ICEEKDKLAKELESSKYECEKVRKAMEDMASALQEMSAEARESQEN 476


>01_01_0055 -
           415666-415767,416510-416602,416776-416850,416920-417071,
           417147-417267,417567-418289,418408-418489,418575-418681,
           418757-418822,418941-419057,419157-419402
          Length = 627

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 330 SAMRLASCAVSRRAFSQSCR---AVSASLEXQSFRW 232
           SA  L S A SRRA S +CR   + SAS    ++ W
Sbjct: 26  SAAHLPSAAASRRASSAACRCTASASASASPSTWDW 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,290,365
Number of Sequences: 37544
Number of extensions: 359168
Number of successful extensions: 1105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)