Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120746.seq
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35064| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 30 2.0
SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4) 30 2.0
SB_52579| Best HMM Match : PRA-PH (HMM E-Value=8.6) 29 3.6
SB_42088| Best HMM Match : PRA-PH (HMM E-Value=8.6) 29 3.6
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 29 3.6
SB_31246| Best HMM Match : PRA-PH (HMM E-Value=8.6) 29 3.6
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 6.2
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 28 8.3
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_35064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +2
Query: 242 DCXSSDAETARQDCENARRETAQLANRM------ADIAQDVIAKPSNPQLCHSLAVCDVG 403
D +D E CE ++A ++ AD + ++AK + PQ CH + V V
Sbjct: 150 DALEADIEDEEAVCEAVNDRIPKIAKKLWGSSIAADRLKTLLAKHAKPQNCHEITVPRVN 209
Query: 404 NNEFAFLRPQKRSLGRS 454
+A + KR+L ++
Sbjct: 210 PEIWAKMPGFKRTLQKA 226
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -3
Query: 465 NRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSC---AMSAMRLASCAVSR 295
N FRL PSDR R S P S A + + G AI C + R++ V +
Sbjct: 136 NCFRLDPSDRKYDRIYCGSACPPSKVAFILSMTKIGGFAIIPCRNKLLKIERISPTRVKQ 195
Query: 294 RAFSQSCRA 268
S+ C A
Sbjct: 196 SVLSEVCFA 204
>SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)
Length = 299
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 242 DCXSSDAETARQDCENARRETAQLANRM------ADIAQDVIAKPSNPQLCHSLAVCDVG 403
D ++D E CE A++A ++ AD + ++AK + PQ CH + V V
Sbjct: 150 DALAADIEDEEAVCEAVNDRIAKIAKKLWGSSIAADRLKPLLAKHAKPQNCHEITVPRVN 209
Query: 404 NNEFAFLRPQKR 439
+A + KR
Sbjct: 210 PEIWAKMPGFKR 221
>SB_52579| Best HMM Match : PRA-PH (HMM E-Value=8.6)
Length = 127
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 218 AHFVCQRNDCXSSDAETARQDCENA-RRETAQLANRMADIAQDVIAKPSNPQLCHSLAVC 394
A + +ND S + ++ NA +RE Q+ N MA D++ + ++ + L++C
Sbjct: 20 AQILTDKNDLESKIKDLFGEEVLNAFKRE--QVVNEMA--ISDLLERKADATIFQRLSLC 75
Query: 395 D----VGNNEFAFLRPQKRSLG 448
+ EF+FL+ QK S G
Sbjct: 76 YGKAVIFKKEFSFLKRQKASFG 97
>SB_42088| Best HMM Match : PRA-PH (HMM E-Value=8.6)
Length = 127
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 218 AHFVCQRNDCXSSDAETARQDCENA-RRETAQLANRMADIAQDVIAKPSNPQLCHSLAVC 394
A + +ND S + ++ NA +RE Q+ N MA D++ + ++ + L++C
Sbjct: 20 AQILTDKNDLESKIKDLFGEEVLNAFKRE--QVVNEMA--ISDLLERKADATIFQRLSLC 75
Query: 395 D----VGNNEFAFLRPQKRSLG 448
+ EF+FL+ QK S G
Sbjct: 76 YGKAVIFKKEFSFLKRQKASFG 97
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 459 NDWVLTTSSLAATTCPTHERAKQSK-GSHTAQQV 557
+D +T S ATTCPT+ K++K G++++ ++
Sbjct: 620 SDSTVTRSETVATTCPTNSAIKETKIGTYSSPKI 653
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 372 SCG-LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 262
SC LLGL ++ SAM + C +S R Q CR +S
Sbjct: 465 SCSSLLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502
>SB_31246| Best HMM Match : PRA-PH (HMM E-Value=8.6)
Length = 127
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 218 AHFVCQRNDCXSSDAETARQDCENA-RRETAQLANRMADIAQDVIAKPSNPQLCHSLAVC 394
A + +ND S + ++ NA +RE Q+ N MA D++ + ++ + L++C
Sbjct: 20 AQILTDKNDLESKIKDLFGEEVLNAFKRE--QVVNEMA--ISDLLERKADATIFQRLSLC 75
Query: 395 D----VGNNEFAFLRPQKRSLG 448
+ EF+FL+ QK S G
Sbjct: 76 YGKAVIFKKEFSFLKRQKASFG 97
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 212 PIAHFVCQ-RNDCXSSDAETARQDCENARRETAQ 310
P+A FVC NDC E+ Q+CE A + Q
Sbjct: 2429 PLA-FVCDGENDCGDGSDESEEQNCERATCDVTQ 2461
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 516 RAKQSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLPL*XDRQIAR 659
RA+Q++ S T S+ Q + AGR A A + P D+Q AR
Sbjct: 886 RARQAR-SKTKTSTTSKPQDNQAAGRTRAGQAKSKTSKPQDQDKQAAR 932
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 505 QPMNVLNKVKEAIPRNKFKAKHNRITLLEDYTREEL-MNVIGF 630
+PM+VL V + P+N KAK +++ Y ++L ++ IGF
Sbjct: 4055 KPMDVLFAVSSSSPQNLLKAKELIKRMIDTYGMDKLKISYIGF 4097
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,646,332
Number of Sequences: 59808
Number of extensions: 383264
Number of successful extensions: 1059
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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