Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120746.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       30   1.8  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    30   1.8  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    30   1.8  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    30   1.8  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    30   1.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    30   1.8  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical pr...    28   7.3  
EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4 ...    28   7.3  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF047653-9|AAC04463.3|  299|Caenorhabditis elegans Serpentine re...    27   9.6  
AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 115  APAVEMDTNDVIAKIDDLTQKLTVXNADLAEA 210
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 115  APAVEMDTNDVIAKIDDLTQKLTVXNADLAEA 210
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4207


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 115  APAVEMDTNDVIAKIDDLTQKLTVXNADLAEA 210
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 115  APAVEMDTNDVIAKIDDLTQKLTVXNADLAEA 210
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 115  APAVEMDTNDVIAKIDDLTQKLTVXNADLAEA 210
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4207


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 115  APAVEMDTNDVIAKIDDLTQKLTVXNADLAEA 210
            A  +    N +I KIDD T +L + +ADL +A
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDA 4847


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 456 RLRPSDRFCGRRNANSLLPTSHTARLWHSCG 364
           RL+PS   CG RN   L P +  A ++ S G
Sbjct: 53  RLKPSSEECGLRNTQPLAPITDIAVIFPSLG 83


>Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical
           protein F11A6.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 180 DGGQRRFGGSNRSLILFANEMIVARA-TLKR 269
           DG +RRF GS R  ++  N  + A   T+KR
Sbjct: 69  DGSERRFCGSQRGFVMHINNALKAEVLTVKR 99


>EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4
           protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 180 DGGQRRFGGSNRSLILFANEMIVARA-TLKR 269
           DG +RRF GS R  ++  N  + A   T+KR
Sbjct: 69  DGSERRFCGSQRGFVMHINNALKAEVLTVKR 99


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 363 LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAV 265
           L+G+ IT+CA+SA+   + A+S  +    C  +
Sbjct: 131 LIGIPITTCAISAVLFITLAISVLSLIAGCSCI 163


>AF047653-9|AAC04463.3|  299|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 30 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 177 FLRQIVNFGNNIICIHFNGRRVLAPCIALEE*PPPKAILVILWRKAIWTSLSVESRLVP 1
           F   +VN  NN+IC+   G   +  CI     P      ++     +WT+   +SR VP
Sbjct: 113 FCFMVVNRANNVICVKSFG--TIQSCII----PHVIVFCILCPLLGVWTAFLSDSRFVP 165


>AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical
           protein M01D1.10 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 210 CFRQICVXHRQFLRQIVNFGNNIICIHFN 124
           CF  +    +QF+R I  F N  +C+HF+
Sbjct: 32  CFSVLSNKTKQFIRDIGVFENVKLCVHFS 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,949,358
Number of Sequences: 27780
Number of extensions: 285053
Number of successful extensions: 776
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)