Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120746.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20260.1 68416.m02566 expressed protein                             29   2.9  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    29   2.9  
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At1g49950.3 68414.m05604 DNA-binding protein, putative contains ...    28   5.1  
At1g49950.2 68414.m05603 DNA-binding protein, putative contains ...    28   5.1  
At1g49950.1 68414.m05602 DNA-binding protein, putative contains ...    28   5.1  
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote...    28   6.8  
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote...    28   6.8  
At5g08630.1 68418.m01026 DDT domain-containing protein low simil...    27   8.9  

>At3g20260.1 68416.m02566 expressed protein
          Length = 437

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +3

Query: 174 KIDGGQRRFGGSNRS-------LILFANEMIVARATLKRLGKIAKTRAAKRRSWPTAW 326
           K +GG   FG  N +       L+L  + +   R   K L K  KT+  +++SWP  W
Sbjct: 325 KPNGGIHLFGNHNNNHVNSTTPLLLVQSSIDKKRVKAKELSK--KTKGLRKKSWPQTW 380


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -3

Query: 441 DRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 262
           DRF    +A S   +S T+  +HS  LLG A    ++S+    +C  + +AF Q  +A  
Sbjct: 175 DRFATSSSA-SATSSSSTSSPFHSSSLLGFAPAVTSVSSAPTPACGPT-QAFGQPTQAFG 232

Query: 261 ASLEXQSFRWQ 229
            S+   + R++
Sbjct: 233 LSMFGSTPRFE 243


>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 358  GFGYHV-----LRNVRHAVGQLRRFAARVFAILPSRFSVARATIISLANKMSD 215
            GFG+HV     L +   A G++R  A +VF  +P R  +A  T++S   ++ D
Sbjct: 899  GFGFHVKIQTTLIDFYSATGRIRE-ARKVFDEMPERDDIAWTTMVSAYRRVLD 950


>At1g49950.3 68414.m05604 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 260 RRSSXNHFVGKQNERSVASAKSALXTVNFCVRSSI 156
           RR     F GKQ   S+ S K+ +  VNF  RS I
Sbjct: 193 RRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQI 227


>At1g49950.2 68414.m05603 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 260 RRSSXNHFVGKQNERSVASAKSALXTVNFCVRSSI 156
           RR     F GKQ   S+ S K+ +  VNF  RS I
Sbjct: 193 RRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQI 227


>At1g49950.1 68414.m05602 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 260 RRSSXNHFVGKQNERSVASAKSALXTVNFCVRSSI 156
           RR     F GKQ   S+ S K+ +  VNF  RS I
Sbjct: 193 RRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQI 227


>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
           kinase, putative Similar to A. thaliana receptor-like
           protein kinase (gb|RLK5_ARATH). ESTs
           gb|ATTS0475,gb|ATTS4362 come from this gene isoform
           contains a TG acceptor site at intron.
          Length = 977

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 356 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 490
           PS+ + C SL   D+GNN F+   P+  SL + L+ L  N+  FS
Sbjct: 114 PSDLKNCTSLKYLDLGNNLFSGAFPEFSSLNQ-LQFLYLNNSAFS 157


>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
           kinase, putative Similar to A. thaliana receptor-like
           protein kinase (gb|RLK5_ARATH). ESTs
           gb|ATTS0475,gb|ATTS4362 come from this gene isoform
           contains a TG acceptor site at intron.
          Length = 976

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 356 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 490
           PS+ + C SL   D+GNN F+   P+  SL + L+ L  N+  FS
Sbjct: 114 PSDLKNCTSLKYLDLGNNLFSGAFPEFSSLNQ-LQFLYLNNSAFS 157


>At5g08630.1 68418.m01026 DDT domain-containing protein low
           similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
           finger domain protein 1A (ATP-utilizing chromatin
           assembly and remodeling factor 1) (ATP-dependent
           chromatin remodelling protein) (Williams syndrome
           transcription factor-related chromatin remodeling factor
           180) {Homo sapiens}; contains Pfam profile PF02791: DDT
           domain
          Length = 723

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 55  NYKNGFWRRSFLKCYARRKYAPAVEMDTNDVIAKIDDLTQKL 180
           ++K   + R+FLK + R     ++    ND +AK  ++T+K+
Sbjct: 170 SWKKFPFSRNFLKSFIRDSTCHSIPWVVNDYLAKAHEITRKI 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,601
Number of Sequences: 28952
Number of extensions: 262496
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)