Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120744.seq
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    77   4e-13
UniRef50_P24730 Cluster: Uncharacterized 25.1 kDa protein in PP3...    70   5e-11
UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...    61   3e-08
UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Re...    36   0.71 
UniRef50_Q1FLZ6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q9I8Z0 Cluster: Odorant receptor 2.10; n=49; Otophysi|R...    33   8.7  
UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Re...    33   8.7  

>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 77.0 bits (181), Expect = 4e-13
 Identities = 53/134 (39%), Positives = 71/134 (52%)
 Frame = -2

Query: 682 VRNQNVQLLAALEPAKDVILPRLNTLLSEITELVTRLDAHVR*IS*TIVGSHQHDAANQR 503
           VR QN Q+LAALE  KD IL RLN L+ +I   +    A ++ ++  ++ +    A   R
Sbjct: 169 VRAQNAQILAALETTKDAILTRLNALVDDIKAALPDQSAQLQELADKLLDAINSVAQTLR 228

Query: 502 NELNNTNSILTNLASSXXXXXXXXXXXXXXIENLAXXXXXXXXXXXGNFNEADRQKLDLV 323
            E+NNTNSILTNLASS              IE +            G   +ADRQ L+ V
Sbjct: 229 GEMNNTNSILTNLASSITNINSTLNNLLAAIEGIG--------GDGGGLGDADRQALNEV 280

Query: 322 HTLVNDIKNILTGT 281
            +LV +I+NIL GT
Sbjct: 281 LSLVTEIRNILMGT 294


>UniRef50_P24730 Cluster: Uncharacterized 25.1 kDa protein in
           PP34-EXO intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 25.1 kDa
           protein in PP34-EXO intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 219

 Score = 70.1 bits (164), Expect = 5e-11
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = -3

Query: 255 QTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKK 154
           +TPTKK G HAMTLRERGVTKPPKKSEKLQQYKK
Sbjct: 4   KTPTKKGGSHAMTLRERGVTKPPKKSEKLQQYKK 37



 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 40/87 (45%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = -1

Query: 263 MSDKRRQKKAA--AMP*RYESAA*QNPQKSLKSCSSTRNYRCRANXRTTADVSSLQNHGE 90
           MSDK   KK    AM  R E    + P+KS K     +        RTTADVSSLQN GE
Sbjct: 1   MSDKTPTKKGGSHAMTLR-ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNPGE 59

Query: 89  SAVFQXXXXXXXXXXXXXXEQKRLYPI 9
           SAVFQ              EQKRLYPI
Sbjct: 60  SAVFQELERLENAVVVLENEQKRLYPI 86


>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 30/34 (88%), Positives = 32/34 (94%)
 Frame = -2

Query: 688 TGVRNQNVQLLAALEPAKDVILPRLNTLLSEITE 587
           TGVRNQNVQLLAALE AKDVIL RLNTLL+EIT+
Sbjct: 189 TGVRNQNVQLLAALETAKDVILTRLNTLLAEITD 222



 Score = 41.5 bits (93), Expect = 0.019
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = -3

Query: 597 KLQNSLPDLTLMLDKLAEQLLEAIN 523
           ++ +SLPDLT MLDKLAEQLL+AIN
Sbjct: 219 EITDSLPDLTSMLDKLAEQLLDAIN 243


>UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Rep:
           CALYX/PEP - Clanis bilineata nucleopolyhedrosis virus
          Length = 338

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = -2

Query: 682 VRNQNVQLLAALEPAKDVILPRLNTLLSEITELVTRLDAHVR*IS*TIVGSHQHDAANQR 503
           +R QNV     L    D +  ++ T+ SEI  L+  +D     +   +  +        R
Sbjct: 209 IRLQNVNTSNQLTALADALEKQIATIASEIERLLGDVDRRFDQLLAALTAALAQLQDAVR 268

Query: 502 NELNNTNSILTNLASS 455
           NEL N N+IL NL SS
Sbjct: 269 NELTNVNAILNNLTSS 284


>UniRef50_Q1FLZ6 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 179

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 417 VSKLLSVPLMFVMLDAKLVKIELVLFNSLRWFAASC*WLPTIVQLIYL 560
           +SK++SVP++  +L   +V I+LV+ N   W A     +   V ++Y+
Sbjct: 23  LSKMISVPMVLTILFLHVVMIDLVILNKFVWLAIIVGSISFFVTVVYV 70


>UniRef50_Q9I8Z0 Cluster: Odorant receptor 2.10; n=49; Otophysi|Rep:
           Odorant receptor 2.10 - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 344

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = +3

Query: 114 NICCGAXVCSAA--IVSCTAATFQTFLGVLLRRALVTSWHGRRFFLSAFVGHAYFVVN-- 281
           +IC      SAA  +V+       ++LG+ L  + +T+W GR   L   V H   V +  
Sbjct: 215 SICASMAQLSAALYVVAPVIIIVLSYLGIFLALSKITTWEGRLKALKTCVSHLLLVGSFF 274

Query: 282 VP-VSIFLISLTKVCTRSSFCLSASL 356
           +P + IF+ + T   + ++  +S SL
Sbjct: 275 LPIICIFIATSTNSLSLNARVISTSL 300


>UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Rep:
           Calyx/pep - Ecotropis obliqua NPV
          Length = 330

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -2

Query: 682 VRNQNVQLLAALEPAKDVILPRLNTLLSEITELVTRLDAHVR*IS*TIVGSHQHDAANQR 503
           ++ QN+ +   L    D++  +L  + +++  L+   D  +      +  +      + R
Sbjct: 197 IKLQNITITGQLTQLIDLLENQLVNIAADLRSLLDNFDTKLNNFLDALNKALAQLQDSVR 256

Query: 502 NELNNTNSILTNLASS 455
           NEL N NSIL NL SS
Sbjct: 257 NELTNINSILNNLTSS 272


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,483,775
Number of Sequences: 1657284
Number of extensions: 10941487
Number of successful extensions: 31072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31046
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)