Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120744.seq
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   3.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   5.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   7.8  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 414 AVSKLLSVPLMFVMLDAKLVKIELVLFNSLRWFAASC 524
           A++  + +P+  +  D+ LV     L NS+ WF   C
Sbjct: 782 AITSEVKLPVSVLSKDSDLVNSVSYLHNSMEWFLQRC 818


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -3

Query: 354 TKPTDKNWTSCTLWLTISKIYSRER*QQNKHVRQTPTKKSGGHAMTLRERGVTKPPKKSE 175
           T  T++   S +  + I    SR+R   + H  QTPTK+       L+E      P    
Sbjct: 27  TNKTNQREHSPSFSIEIPTTPSRKRTLASSHF-QTPTKRIKYELGELQEEKTDLYPNFPA 85

Query: 174 KLQQYKKLSLPS 139
           +L++ KK  LP+
Sbjct: 86  QLKENKKPKLPT 97


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 242 FVGVCRTCLFCCQRSREYIFDIVNQSVH 325
           F G   T LF C  S+ Y+  +VNQ V+
Sbjct: 382 FAGNLITELFFCSDSKYYVRHLVNQQVY 409


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 518 CSKPAQRVEQHQLYFDQFSVEH-HKHQWYAQQFADRYRKL 402
           C  P++++ + +LY     +    KHQ+Y ++FAD +R++
Sbjct: 381 CESPSEKLPR-RLYLLLVCITCLTKHQYYDEEFADVWREI 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,654
Number of Sequences: 5004
Number of extensions: 45990
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)