Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120744.seq
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0598 - 25391923-25393197                                         30   1.5  
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    30   2.0  
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999     29   4.6  
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    28   6.1  
09_06_0002 + 20121846-20123308,20123420-20123426                       28   8.0  

>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 222 MTLRERGVTKPPKKSEKLQQYKKLSL 145
           ++LR +GVT+ PKK EKLQ  + L +
Sbjct: 95  LSLRNKGVTQLPKKIEKLQYLETLDI 120


>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 2   GTRWDTIVFVHFLILQPHSLIFPTLEKRHSPRGSAKKKHLLWC 130
           G+  D  +  HFL   P S  F  L  +H P+    + HLL C
Sbjct: 22  GSNMDHHLLPHFLHRSPPSPCFLLLRTQHKPKPPQPQLHLLLC 64


>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
          Length = 764

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 361 NFNEADRQKLDLVHTLVNDIKNILTGTLTTK*ACPTNADKKKRRPCHDVT 212
           + ++     LDLV   ++ +KN +   L    ACP  ++K  +R  HD +
Sbjct: 574 SMSKTSSMNLDLVLFQISRLKNPIPNALNESPACPDPSEKWLKRLQHDTS 623


>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 123 CGAXVCSAAIVSCTAATFQTFLGVLLRRALVTSW 224
           CGA  C+  ++S      Q FLG +   ALV +W
Sbjct: 647 CGAAQCATVLISGRPVVVQPFLGAM--DALVAAW 678


>09_06_0002 + 20121846-20123308,20123420-20123426
          Length = 489

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 357 LTKPTDKNWTSCTLWLTISKIYSRE 283
           L  P+  + T+C+LW+T S I+ +E
Sbjct: 238 LAHPSPSSSTNCSLWMTKSAIFPKE 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,095
Number of Sequences: 37544
Number of extensions: 311599
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)