Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120744.seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27066| Best HMM Match : HALZ (HMM E-Value=7.9)                      31   0.88 
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)                    31   0.88 
SB_41132| Best HMM Match : EGF_CA (HMM E-Value=0.00043)                29   3.6  
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   29   4.7  
SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   6.2  
SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_16446| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_27066| Best HMM Match : HALZ (HMM E-Value=7.9)
          Length = 99

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -2

Query: 655 AALEPAKDVILPRLNTLLSEITELVTRLDAHVR*IS*TIVGSHQHDAANQRNELNNTNSI 476
           AAL+   + +  + N L ++  + V  L+  V  +   I   HQ DA   RNE+  +NSI
Sbjct: 24  AALQKQYNELEQKYNQLEADYHQTVKELNHKVIDLQQQIDDYHQSDAEPNRNEIQRSNSI 83

Query: 475 LT 470
           ++
Sbjct: 84  MS 85


>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1236

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 219 SWHGRRFFLSAFVGHAYFVVNVPVSIFLISLTKV 320
           SWH  R+ L  F+ H YF   + V I + SLT V
Sbjct: 512 SWHSLRYNLLLFIEHKYFEFFILVMIGISSLTLV 545


>SB_41132| Best HMM Match : EGF_CA (HMM E-Value=0.00043)
          Length = 307

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 209 SRNVMAWPPLFFVGVCRTCLFCCQRSRE 292
           S  +MA+  L+F+ + +TC+FC Q S++
Sbjct: 105 SVRIMAYHVLYFMYIMQTCVFCEQGSKD 132


>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -1

Query: 545 NNCWKPSTRCSKPAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 405
           N  +K     ++ + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 33  NRIYKHQKHITEYSNRIYKHQKHLTEYSNRIYKHQKHLTEYSNRIYK 79



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -1

Query: 545 NNCWKPSTRCSKPAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 405
           N  +K     ++ + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 47  NRIYKHQKHLTEYSNRIYKHQKHLTEYSNRIYKHQKHITEYSNRIYK 93


>SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 551

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 219 TLRERGVTKPPKKSEKLQQYKKLSLPSKXAHHSRCFFFAEP 97
           T+R R      KKSEK ++ ++L L  +   H  C +  +P
Sbjct: 117 TMRRRPKRSCWKKSEKARKQRRLPLLCRMGFHPPCSYLVDP 157


>SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 306 ISKIYSRER*QQNKHVRQTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKLSLP-SKXA 130
           I+K ++ ER        ++PTK +   + TLR + + +PP+ +++    K  + P +K  
Sbjct: 19  ITKSHTTERKTTPSTSTRSPTKSTKRPSSTLRRQKLLRPPQTTQQKTAIKTGNKPQAKAR 78

Query: 129 HHSR 118
            H R
Sbjct: 79  SHPR 82


>SB_16446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1598

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 252 TPTKKSGGHAMTLRERGVTKPPKKSEKLQ--QYKKLSLPSKXAH 127
           T   +SG     ++ +GVTKPP++ +K     YK ++ P +  H
Sbjct: 535 TKPPQSGQKDTGMQYKGVTKPPQRGQKDTGLHYKGMTKPPQKGH 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,598,853
Number of Sequences: 59808
Number of extensions: 366344
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)