Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120744.seq
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70718-8|CAA94675.2|  301|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     29   3.1  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    29   3.1  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC006713-3|AAK68405.1|  291|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   9.6  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    27   9.6  

>Z70718-8|CAA94675.2|  301|Caenorhabditis elegans Hypothetical
           protein C04G2.10 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 207 RGVTKPPKKSEKLQQYKKLSLPSKXAHHSRCF 112
           RGV +  KK+EK  +YK++    K A  SRC+
Sbjct: 11  RGVQQ--KKNEKQNEYKRIGREKKLADDSRCY 40


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 189 PKKSEKLQQYKKLSLPSKXAHHSRCFFFAEPR 94
           P     L++ ++ +LP +  HHSR FF A P+
Sbjct: 294 PGDFASLRRGREFALPPEQEHHSRRFFSASPK 325


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 189 PKKSEKLQQYKKLSLPSKXAHHSRCFFFAEPR 94
           P     L++ ++ +LP +  HHSR FF A P+
Sbjct: 294 PGDFASLRRGREFALPPEQEHHSRRFFSASPK 325


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 260 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 355
           TCLF C     YI DI+  ++  V  LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603


>AC006713-3|AAK68405.1|  291|Caenorhabditis elegans Hypothetical
           protein Y119D3A.2 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 484 WCCSTRCAGLLHRVDGF 534
           W C   C GL H VDGF
Sbjct: 19  WVCRNVCQGLRHAVDGF 35


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 503  QRVEQHQLYFDQFSVEHHKHQ 441
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1565 QQHQQHQQYMQQQQQHHHQHQ 1585


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 503  QRVEQHQLYFDQFSVEHHKHQ 441
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 503  QRVEQHQLYFDQFSVEHHKHQ 441
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 VGHAYFVVNVPVSIFLISLTKVC 323
           V H Y +VN+  S+F++ +T +C
Sbjct: 62  VNHFYHMVNISYSLFVLLITVIC 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,360
Number of Sequences: 27780
Number of extensions: 277456
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)