Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120744.seq
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62600.1 68418.m07856 transportin-SR-related contains weak si...    30   1.7  
At4g39450.1 68417.m05582 expressed protein                             29   2.2  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    29   3.8  
At3g18215.1 68416.m02317 expressed protein contains Pfam profile...    27   8.9  
At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:...    27   8.9  

>At5g62600.1 68418.m07856 transportin-SR-related contains weak
           similarity to transportin-SR (GI:5052414) [Homo sapiens]
          Length = 958

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 227 WPPLFFVGVCRTCLFCCQRSREYIFDIVNQSVHEVQF 337
           W       +CR C +  + S  YI D + + + ++QF
Sbjct: 670 WDMRTMESLCRACKYAVRTSGRYIIDTIGEMLEKIQF 706


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 673  QNVQLLAALEPAKDVILPRLNTLLSEITELVTRLDAHVR*IS*TIVG-SHQHDAANQRNE 497
            +NV   +     KD++    + L+     ++T++D+H+   +   +G  H   AA Q N+
Sbjct: 827  KNVGAFSPSSIGKDMVNGYSSNLIDRTASIITKMDSHISSATKNRIGEKHDARAAGQGNQ 886

Query: 496  LNNTNS 479
             N   S
Sbjct: 887  RNQDTS 892


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 312 LTISKIYSRER*QQNKHVRQTPTKK-SGGHAMTLRERGVTKPPKKS 178
           LT S+  S    ++ +HVR++PTK  S       +ER +++ P KS
Sbjct: 426 LTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVKKERDISRSPSKS 471


>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 244

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 75  LKNGTLPVVLQRRNICCGAXVCSAAIVSCT 164
           LKNGTL V   R NI     + + AI  C+
Sbjct: 58  LKNGTLAVQTIRNNIMASTLLATTAITLCS 87


>At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 824

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  RHSPRGSAKKKHLLWCAXLLGSDSFLYCCNFSDFFG 190
           RH+P G+  K   L+   LL   S+LY   F  FFG
Sbjct: 308 RHTPEGAPVKNVYLYIGLLLAYLSYLYWSRFL-FFG 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,812
Number of Sequences: 28952
Number of extensions: 247083
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)