Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120743.seq
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.3  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   1.3  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    24   1.3  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 546 SNGLKVARGLQLVTPXXLGLAISGTLSNWTLAATTSHTDSEYNITLFSTV 397
           +NG+ + R  + V+   +    S  + N+T  A+ S + + Y  +LF  V
Sbjct: 648 TNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASNSASVTTYTTSLFINV 697


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 90  SLQFSIIKIVFQCFHNAKFASNRAFFVARPMM 185
           S+  S+  ++FQ ++    A+ +A FV  PM+
Sbjct: 258 SIGVSLFDVLFQAYYLYYVATGKASFVTVPMI 289


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 90  SLQFSIIKIVFQCFHNAKFASNRAFFVARPMM 185
           S+  S+  ++FQ ++    A+ +A FV  PM+
Sbjct: 258 SIGVSLFDVLFQAYYLYYVATGKASFVTVPMI 289


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 595 YWVAQDSSYKYFEVI 639
           Y+V ++  YKY++++
Sbjct: 151 YFVQRNQEYKYYQIL 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,172
Number of Sequences: 336
Number of extensions: 3584
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)