Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120743.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   132   3e-32
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   132   3e-32
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   2.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   3.4  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   5.9  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  132 bits (320), Expect = 3e-32
 Identities = 67/141 (47%), Positives = 83/141 (58%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ    
Sbjct: 2   GAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVI 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                             TYGKP     + LK  R+ +  A E            +SYWV
Sbjct: 62  YRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWV 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            QD++YK+FEVILVDPSHKAI
Sbjct: 122 NQDATYKFFEVILVDPSHKAI 142


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  132 bits (320), Expect = 3e-32
 Identities = 67/141 (47%), Positives = 83/141 (58%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ    
Sbjct: 2   GAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVI 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                             TYGKP     + LK  R+ +  A E            +SYWV
Sbjct: 62  YRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWV 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            QD++YK+FEVILVDPSHKAI
Sbjct: 122 NQDATYKFFEVILVDPSHKAI 142


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = -3

Query: 332 RYCHTLTRNKKRITSL-SFFLYNS*IYCRHPS*QPVADLATKSIQIDQKSHHRSGHKKGS 156
           RY   +++ ++R +SL  +  ++S I+  + + Q + DLATK++Q    SH R G  K +
Sbjct: 32  RYKTEISKIQRRTSSLIQYEEHSSAIFIYYETPQ-MFDLATKALQTLYNSHTREGETKAA 90


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 86  EFSPIFNNKNC----VSVFSQCQICVQSSLFCGQTDDVTSDQFVL 208
           E SP+ N++NC    +S+F +C+I +  +       D   D  VL
Sbjct: 357 ELSPLDNSENCRKQLISIFKRCEIMLPKTCTVAHLLDKLFDSLVL 401


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 214 VARSATGC*DGCLQYIQELYRKKLS 288
           V   A GC DG +QY+ ELY   LS
Sbjct: 438 VGAIAEGCMDGMVQYLPELYPYFLS 462


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 286 SVFSYTTPEYIVGTHLSSLWQT*QQNQYKLIRSHIIGLATKKARLDA 146
           S+F Y T   +   ++S LW+    N   +   HI  L+  K   DA
Sbjct: 262 SLFGYITGHAVFEGYVSRLWKEILDNNLNIAIHHIFKLSEAKEAHDA 308


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 127 H*NTIFIIENWREFVPGVHLNLIFNIIVRY*IR 29
           H N +F+IEN R   P V  N+I   + +  +R
Sbjct: 491 HDNKVFLIENLRHMFPYVTKNIISETLGKVAVR 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,702
Number of Sequences: 5004
Number of extensions: 56445
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)