Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120743.seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   132   2e-31
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   132   2e-31
05_02_0037 + 5883285-5884292                                           31   0.65 
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     28   8.0  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  132 bits (320), Expect = 2e-31
 Identities = 67/141 (47%), Positives = 82/141 (58%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                              YGKPK     QLK  RN +S+A E            +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            +DS+YKYFE+ILVD +H AI
Sbjct: 227 NEDSTYKYFEIILVDVAHSAI 247


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  132 bits (320), Expect = 2e-31
 Identities = 67/141 (47%), Positives = 82/141 (58%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 2   GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                              YGKPK     QLK  RN +S+A E            +SYWV
Sbjct: 62  YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            +DS+YKYFE+ILVD +H AI
Sbjct: 122 NEDSTYKYFEIILVDVAHSAI 142


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 324 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 476
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 334 DGTAIPSHATKNA*HRSVFSYTTPEYIVGTHLSS 233
           DGT++   +T +   R    Y  PEY VG H++S
Sbjct: 881 DGTSLIQQSTSSMGFRGTIGYAAPEYGVG-HIAS 913


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,394,438
Number of Sequences: 37544
Number of extensions: 381335
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)