Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120743.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   3e-38
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   3.5  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 28   8.1  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  155 bits (376), Expect = 3e-38
 Identities = 76/141 (53%), Positives = 91/141 (64%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ    
Sbjct: 2   GAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFVI 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                            ATYGKP     ++LK  R+L+S+A E            +SYWV
Sbjct: 62  YRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWV 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            QDS YKYFEVI+VDP HKAI
Sbjct: 122 GQDSIYKYFEVIMVDPFHKAI 142


>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 584 C*ALTGLHKILHTSISRLSSWTRHTRPFRRDPKI 685
           C  + G+ ++  +SI R+ +W R TR  R+D  I
Sbjct: 375 CMPMDGVPRLDSSSIDRMVNWARDTRTLRKDDNI 408


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 298 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 411
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 288 RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 440
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,503,029
Number of Sequences: 59808
Number of extensions: 448281
Number of successful extensions: 910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)