Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120743.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   145   3e-35
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  145 bits (351), Expect = 3e-35
 Identities = 66/141 (46%), Positives = 89/141 (63%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ    
Sbjct: 2   GAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVV 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                             TYGKPK    ++LK  ++ Q++A              +SYWV
Sbjct: 62  YRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWV 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
           A+DS+YK++EV+L+DP HKAI
Sbjct: 122 AEDSTYKFYEVVLIDPFHKAI 142


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 540  GLKVARGLQLVTPXXLGLAISGTLSNWTLAATTSHTDSEYNITLFS 403
            GLKVAR L       +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVARDL---VDQNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 212 KSIQIDQKSHHRSGHKKGSIGRKFGIVKTLKHNFYY*KLERIRTRR 75
           KS +  +K  H SG K+GS   K    ++ K+N    K+E+  +RR
Sbjct: 102 KSSRSKRKKRHSSGSKRGSSRDKRDSSRSKKNNVSAHKMEKSPSRR 147


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = -1

Query: 613 NLVQPSKSSTHGDHRNDGQHAXQQWIEGCAWASTGDTMXSWACHKWHP--*QLDA-CGH- 446
           N+ QP  SS    HR+D   A  Q           +T   W C   H     L A C H 
Sbjct: 590 NIQQPGSSSLRQHHRSDTNGAALQRKITSRVRLDSNTPEKWTCRDCHASFHNLQALCSHR 649

Query: 445 HVAHG 431
           H +HG
Sbjct: 650 HESHG 654


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 363
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 363
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,706
Number of Sequences: 27780
Number of extensions: 324805
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)