BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120743.seq (688 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 145 3e-35 AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 29 4.1 AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical ... 28 5.4 Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 27 9.5 Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 27 9.5 U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical pr... 27 9.5 >U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein, large subunitprotein 15 protein. Length = 204 Score = 145 bits (351), Expect = 3e-35 Identities = 66/141 (46%), Positives = 89/141 (63%) Frame = +1 Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423 G +Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ Sbjct: 2 GAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVV 61 Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603 TYGKPK ++LK ++ Q++A +SYWV Sbjct: 62 YRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWV 121 Query: 604 AQDSSYKYFEVILVDPSHKAI 666 A+DS+YK++EV+L+DP HKAI Sbjct: 122 AEDSTYKFYEVVLIDPFHKAI 142 >AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical protein Y116F11B.3 protein. Length = 1042 Score = 28.7 bits (61), Expect = 4.1 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -2 Query: 540 GLKVARGLQLVTPXXLGLAISGTLSNWTLAATTSHTDSEYNITLFS 403 GLKVAR L +G+ + G ++ T ATT+ + Y TL+S Sbjct: 972 GLKVARDL---VDQNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014 >AC006665-2|AAF39904.1| 341|Caenorhabditis elegans Hypothetical protein H27M09.5 protein. Length = 341 Score = 28.3 bits (60), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -3 Query: 212 KSIQIDQKSHHRSGHKKGSIGRKFGIVKTLKHNFYY*KLERIRTRR 75 KS + +K H SG K+GS K ++ K+N K+E+ +RR Sbjct: 102 KSSRSKRKKRHSSGSKRGSSRDKRDSSRSKKNNVSAHKMEKSPSRR 147 >Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical protein R06C7.9 protein. Length = 729 Score = 27.5 bits (58), Expect = 9.5 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Frame = -1 Query: 613 NLVQPSKSSTHGDHRNDGQHAXQQWIEGCAWASTGDTMXSWACHKWHP--*QLDA-CGH- 446 N+ QP SS HR+D A Q +T W C H L A C H Sbjct: 590 NIQQPGSSSLRQHHRSDTNGAALQRKITSRVRLDSNTPEKWTCRDCHASFHNLQALCSHR 649 Query: 445 HVAHG 431 H +HG Sbjct: 650 HESHG 654 >Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical protein R03D7.2 protein. Length = 542 Score = 27.5 bits (58), Expect = 9.5 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 265 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 363 EL R + + + ++ R W LTR+HR P+ Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296 >U55857-5|AAA98031.1| 602|Caenorhabditis elegans Hypothetical protein K08D10.5 protein. Length = 602 Score = 27.5 bits (58), Expect = 9.5 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 265 ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 363 EL R + + + ++ R W LTR+HR P+ Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,580,706 Number of Sequences: 27780 Number of extensions: 324805 Number of successful extensions: 682 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 654 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 681 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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