Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120743.seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           131   5e-31
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           131   5e-31
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    28   5.0  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    28   5.0  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   8.8  
At3g18050.1 68416.m02296 expressed protein                             27   8.8  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  131 bits (316), Expect = 5e-31
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVV 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                              YGKP      QLK  R+ +S+A E            +SYW+
Sbjct: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWL 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            +DS+YKY+E+ILVDP+H A+
Sbjct: 122 NEDSTYKYYEIILVDPAHNAV 142


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  131 bits (316), Expect = 5e-31
 Identities = 65/141 (46%), Positives = 82/141 (58%)
 Frame = +1

Query: 244 GCLQYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 423
           G  +Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 2   GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVV 61

Query: 424 XXXXXXXXXXXXXXXXXATYGKPKXXWCHQLKPTRNLQSIAXEXXXXXXXXXXXXSSYWV 603
                              YGKP      QLK  R+ +S+A E            +SYW+
Sbjct: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWL 121

Query: 604 AQDSSYKYFEVILVDPSHKAI 666
            +DS+YKY+E+ILVDP+H A+
Sbjct: 122 NEDSTYKYYEIILVDPAHNAV 142


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 80  WYEFSPIFNNKNC------VSVFSQCQICVQSSLFCGQTDDVTSDQFV 205
           W+E+ P  N +NC       S+   C++  QSS    QTD + SD+ V
Sbjct: 44  WFEYCPSTNKRNCPICKQKCSLKDPCRLYFQSS--GNQTDSIASDKVV 89


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 607 VQPSKSSTHG--DHRNDGQHAXQQWIEGCAWASTGDTMXS 494
           +  S S +HG   H N+ Q     W+ GC + + G  + S
Sbjct: 118 ISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLS 157


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 607 VQPSKSSTHG--DHRNDGQHAXQQWIEGCAWASTGDTMXS 494
           +  S S +HG   H N+ Q     W+ GC + + G  + S
Sbjct: 165 ISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIGTVLLS 204


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 RVWQYRQLTRMHRAPRPTRPD 378
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 379 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 260
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,359
Number of Sequences: 28952
Number of extensions: 300300
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)