Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120742.seq
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   3.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   3.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   4.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.2  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 487 IAETSLKCDKLKIKIKYTTSPSATAL 564
           I ETSL+ D+ K+  K   SP+  AL
Sbjct: 104 INETSLQLDENKLDKKNDDSPALRAL 129


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 487 IAETSLKCDKLKIKIKYTTSPSATAL 564
           I ETSL+ D+ K+  K   SP+  AL
Sbjct: 104 INETSLQLDENKLDKKNDDSPALRAL 129


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 487 IAETSLKCDKLKIKIKYTTSPSATAL 564
           I ETSL+ D+ K+  K   SP+  AL
Sbjct: 104 INETSLQLDENKLDKKDDDSPALRAL 129


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 216 VMGAFSPLDPSSFRGLNK 269
           V  AF+P  PS+ RG +K
Sbjct: 116 VAAAFAPQGPSTGRGASK 133


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 260 PEQAVIKHVTLSLN---VDFENKVLNGSATLDVDVLQDIGDVVL 382
           P   + K  TL L    +DF   VL+    LDVD++ ++   V+
Sbjct: 127 PSDKLSKIQTLKLAARYIDFLYHVLSNENALDVDLIGNVCSYVV 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,799
Number of Sequences: 336
Number of extensions: 2758
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)