Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120742.seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    75   1e-14
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    31   0.21 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   3.4  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    25   7.9  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = +1

Query: 523 IKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVK 678
           + I Y+T+   TALQ+L+P QT G K PY+FS+CQ IHARS +PCQDTP VK
Sbjct: 104 LTILYSTTKDCTALQFLKPEQTIGGKFPYVFSECQAIHARSFIPCQDTPSVK 155


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 281 HVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELD-GAQLTYKLDDPV 457
           H  LSL  D E     G   + +DVL+D   + L    L I +  L+ G+Q  +  +   
Sbjct: 28  HYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQTVWASE--- 84

Query: 458 PNYG-SKLTIQLP 493
            +YG  ++ +Q P
Sbjct: 85  VSYGDERIVLQFP 97



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 616 SQCQPIHARSILPCQDTPFVKFTY 687
           +Q +P  AR   PC D P +K T+
Sbjct: 141 TQMEPTSARRAFPCWDEPALKATF 164


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +2

Query: 263  EQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 442
            E + +K++TLSL V+ E  V   S  + VD L        DS+EL I+ +   G+    +
Sbjct: 955  EISQLKNLTLSLVVNAEEGVF--STLITVDNLDAQVQSCADSTELLIKVLSDLGSTEDEE 1012

Query: 443  LDD-----PVPNYGSKLT 481
            + D     P+ +Y   LT
Sbjct: 1013 ISDCYLALPIEDYAKSLT 1030


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 251 LSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQ 430
           LS P    +K +  S     ++ V NG     +D  +D  + ++ S E +   I LD + 
Sbjct: 21  LSNPS-IPLKVLNKSFRSSRQSSVSNGHGLYSLD--RDETESLMSSHEASNAGISLDSSF 77

Query: 431 LTYKLDDPVPNYGS 472
              ++  P P YG+
Sbjct: 78  RVIQVGQPEPQYGN 91


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +1

Query: 475 IDYTIAETSLKCDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILP 654
           +DYTI E  LK  K   + +YT S S   L W  P+         + + C+ +   ++ P
Sbjct: 256 VDYTIPEPILKTVKFSSEDEYTGSVS---LAWNGPSALDAYTVFAIETLCEFLSESAVSP 312

Query: 655 CQDT------PFVKFTY 687
              T      PF  F Y
Sbjct: 313 FGQTFVEIEDPFCSFVY 329


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 493 ETSLKC-DKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHAR 642
           +T LK  D LK ++ +T S    A    +P+  + + +  +F QC P H +
Sbjct: 282 DTLLKAFDMLKHELSFTQSGRHLAEIGAEPSAFATRWYLTVFHQCVPFHTQ 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,025
Number of Sequences: 5004
Number of extensions: 45283
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)