Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120742.seq
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670...    77   2e-14
04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294     28   6.1  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           28   6.1  
02_04_0595 - 24186714-24186898,24187004-24187150,24187647-241877...    28   8.1  
01_06_1629 - 38749184-38749303,38749389-38749479,38749555-387496...    28   8.1  
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    28   8.1  

>03_06_0470 +
           34164873-34165856,34166335-34166568,34166680-34167006,
           34168426-34168716
          Length = 611

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/64 (51%), Positives = 44/64 (68%)
 Frame = +1

Query: 499 SLKCDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVK 678
           +L  D     + ++TSPSA+ALQWL P QT+    P++FSQCQ IHARS+ PC DTP  +
Sbjct: 90  TLPPDTTSFLLTFSTSPSASALQWLSPPQTASSL-PFVFSQCQSIHARSVFPCHDTPAAR 148

Query: 679 FTYD 690
            T+D
Sbjct: 149 ITFD 152


>04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294
          Length = 279

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = -3

Query: 401 LSVHSNQGPHLRYLGAXXXXXXXXXXRLCFQNPRSTIKSHVLLQLVQAAK--GRRIQRTE 228
           LS   ++  H+ YL              CF  P  +      LQL +  K  GRR+   E
Sbjct: 132 LSTEESRFHHVAYLQQIWWLEVAGEIDFCF--PAGSYSLFFRLQLGRPHKYMGRRVYGYE 189

Query: 227 STHDWNL 207
           S H WN+
Sbjct: 190 SIHGWNI 196


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 251 LSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELT--IESIELDG 424
           +S P  + I ++    N++F N  LNG+    +  L  +  + LDS++L+  +E I +  
Sbjct: 426 MSGPIPSWIGNLIQLNNLNFRNNNLNGTIPKSIFALPALQSLYLDSNQLSGHLEDIPVPL 485

Query: 425 AQLTYKLD 448
           +   Y +D
Sbjct: 486 SSSVYDID 493


>02_04_0595 -
           24186714-24186898,24187004-24187150,24187647-24187718,
           24188061-24188204,24188769-24188840,24189233-24189304,
           24189805-24189876,24190214-24190285,24190416-24190487,
           24190685-24190756,24190957-24191031,24191226-24191372,
           24191670-24191877,24192240-24192368,24192454-24192663
          Length = 582

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 569 HCNAVADGDVVYLILIFNLSHLRL 498
           +CN +AD D+ YL  + NL  L+L
Sbjct: 243 YCNNIADSDIKYLSDLTNLKELQL 266


>01_06_1629 -
           38749184-38749303,38749389-38749479,38749555-38749630,
           38749860-38749932,38750488-38750580,38750827-38750883,
           38751406-38751492,38751600-38751674,38751779-38751826
          Length = 239

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 332 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 499
           SA +D  V+   GDVVLD +E+T ++I+L GA L    D        +L +  P +
Sbjct: 9   SALVDNHVVP--GDVVLDLTEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPNK 61


>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 332 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 499
           SA +D  V+   GDVVLD +E+T ++I+L GA L    D        +L +  P +
Sbjct: 9   SALVDNHVVP--GDVVLDLAEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPSK 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,098
Number of Sequences: 37544
Number of extensions: 274211
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)