Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120742.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)           99   2e-21
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           40   0.002
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 32   0.51 
SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054)           31   0.89 
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  30   2.0  
SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 29   2.7  
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                 28   6.2  
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)                   28   8.3  
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   8.3  
SB_50283| Best HMM Match : F-box (HMM E-Value=0.00036)                 28   8.3  
SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
          Length = 457

 Score =   99 bits (238), Expect = 2e-21
 Identities = 43/60 (71%), Positives = 49/60 (81%)
 Frame = +1

Query: 514 KLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDA 693
           +L I I Y TSP A+ALQWL P QTSGKKHPY+F+QCQ IHARSI+PCQD+P VK TY A
Sbjct: 49  RLSIAISYRTSPDASALQWLTPEQTSGKKHPYMFTQCQAIHARSIIPCQDSPGVKATYSA 108


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 523  IKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDA 693
            + IKY TSP   +L W     T     P +FS    I+ RS++PCQ+ P    T+ A
Sbjct: 1353 VVIKYHTSPEGQSLSW----ATDQDGRPCVFSPGAYINNRSLMPCQEPPIAMSTWQA 1405



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = +2

Query: 251  LSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVD-----VLQDIGDVVLDSSELTIESIE 415
            ++  ++ ++KH  L L VDF+ KVL GS  L ++       Q+   + LDS+ + +ES+ 
Sbjct: 1026 MANVDEVLVKHYILDLTVDFDEKVLRGSIVLFLEPTHEKATQNTFQLCLDSTLVNVESV- 1084

Query: 416  LDGAQLTYKLDDPVPNYG 469
               +++    D  +P YG
Sbjct: 1085 ---SEVFLPDDFKIPFYG 1099


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 583 QTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYD 690
           Q +G++  ++ +Q +P+ AR   PC D P +K T++
Sbjct: 218 QNNGQRVYFVATQFEPVKAREAFPCFDEPGMKATFN 253


>SB_45004| Best HMM Match : Peptidase_M1 (HMM E-Value=0.0054)
          Length = 236

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 607 YLFSQCQPIHARSILPCQDTPFVKFTYD 690
           Y+ SQ  P  ARS+ PC D P  K T++
Sbjct: 70  YVASQFGPAEARSVFPCFDEPAFKATFN 97


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 263 EQAVIKHVTLSLNVDF--ENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLT 436
           E+   + +T +LN  F     V+   A  +  V Q  GDV   S E     IE+DG  +T
Sbjct: 81  EKTTFEEMTTALNTYFGARKNVIVDRARFNRRV-QKPGDVSKSSVEYWKAEIEVDGQPIT 139

Query: 437 YKLD 448
           +KLD
Sbjct: 140 FKLD 143


>SB_5727| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 904

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 574 QPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYD 690
           Q     GK      +Q QP  AR   PC D P +K T++
Sbjct: 350 QYTHKDGKNVTIATTQFQPTDARKAFPCLDEPALKATFN 388


>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 1582

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 544 SPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILP 654
           SPSA  + WL     +G+KH  L  +  PIH RSI P
Sbjct: 655 SPSAV-MGWL-----TGQKHRNLSKEISPIHVRSINP 685


>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
          Length = 824

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 266 QAVIKHVTLSLNVDF--ENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTY 439
           +A  + +T +LN  F     V+   A  +  V Q  G+V   S E     IE+DG  +T+
Sbjct: 82  KATFEEMTTALNTYFGARKNVIVDRARFNRRV-QKPGEVSKSSVEYWKAEIEVDGQPITF 140

Query: 440 KLD 448
           KLD
Sbjct: 141 KLD 143


>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 791

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 607 YLFSQCQPIHARSILPCQDTPFVKFTYD 690
           ++ +Q +P +AR+  PC D P +K T++
Sbjct: 131 FVATQFEPHYARTAFPCFDEPALKATFN 158


>SB_50283| Best HMM Match : F-box (HMM E-Value=0.00036)
          Length = 609

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/88 (20%), Positives = 34/88 (38%)
 Frame = -1

Query: 406 FYCQFTRIKDHISDILEHVNVESGGSV*DFVFKIHVQR*SHMFYYSLFRPRKEDGSRGLK 227
           F C+   I  H    L    + +     DF+F  H     H+++   F  +  + +R   
Sbjct: 34  FTCRRLNIIVHYFGGLSRCQILAVSDAFDFIFSKHSIHFRHLYFNGKFELQLTENTRLFS 93

Query: 226 APMTGT*LKRDLVCFVCKPKFIRECLTL 143
             +TG   K++ +  +C      E  T+
Sbjct: 94  KALTGCLNKKEKLKSLCSHALAGESFTI 121


>SB_6571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 598 KHPYLFSQCQPIHARSILP 654
           KH +LFS C P H +  +P
Sbjct: 14  KHQHLFSSCHPHHTKKAIP 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,784,170
Number of Sequences: 59808
Number of extensions: 341975
Number of successful extensions: 804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)