Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120742.seq
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 475  IDYTIAETSLKCDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIH 636
            + Y   E  +      IK+   +SP A  + WL P + +G    Y L+++      +  H
Sbjct: 1204 VTYCQTEEDVPGSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNH 1262

Query: 637  ARSILPCQDTPF 672
             +  LP ++T F
Sbjct: 1263 GKRTLPAKNTYF 1274


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 475  IDYTIAETSLKCDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIH 636
            + Y   E  +      IK+   +SP A  + WL P + +G    Y L+++      +  H
Sbjct: 1200 VTYCQTEEDVPGSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNH 1258

Query: 637  ARSILPCQDTPF 672
             +  LP ++T F
Sbjct: 1259 GKRTLPAKNTYF 1270


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 560 AVADGDVVYLILIFNLSHLRL 498
           AVAD  V  L++ FN+++L L
Sbjct: 79  AVADLAVAILVMPFNVAYLLL 99


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 560 AVADGDVVYLILIFNLSHLRL 498
           AVAD  V  L++ FN+++L L
Sbjct: 79  AVADLAVAILVMPFNVAYLLL 99


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 560 AVADGDVVYLILIFNLSHLRL 498
           AVAD  V  L++ FN+++L L
Sbjct: 79  AVADLAVAILVMPFNVAYLLL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,335
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)