Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120742.seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...    87   1e-17
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    38   0.008
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH...    28   5.1  
At1g78540.1 68414.m09154 transcription factor-related weak simil...    28   5.1  
At1g60080.1 68414.m06769 3' exoribonuclease family domain 1-cont...    28   5.1  
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    28   6.8  
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    28   6.8  

>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 36/54 (66%), Positives = 42/54 (77%)
 Frame = +1

Query: 529 IKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYD 690
           I Y+TSPSA+ALQWL P QT  K HPY+++QCQ IHARSI PCQDTP  +  YD
Sbjct: 98  IVYSTSPSASALQWLSPLQTFSKLHPYVYTQCQAIHARSIFPCQDTPAARIRYD 151



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 281 HVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESI 412
           HV LSL +DF   +++GSA L +      G++ LD+  ++I  +
Sbjct: 19  HVALSLYLDFNTSIIHGSALLTLSSAFS-GELSLDTRCISIAMV 61


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +2

Query: 269 AVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 442
           A + H  L L++DF+ + + G   L+V V  DIG V L +  L IES+ +DG    ++
Sbjct: 23  AKVLHQKLFLSIDFKKRQIYGYTELEVSV-PDIGIVGLHAENLGIESVLVDGEPTVFE 79


>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
           (CHX19) similar to putative Na+/H+-exchanging protein
           GB:CAA23036 from [Arabidopsis thaliana]; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 857

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 509 HLRLVSAIV*SIWSHSSALGHLICTSIEHRLVLLILLSVHSNQ 381
           HLR V+    +  S  S++   ICTS   + V +ILL  H +Q
Sbjct: 590 HLRAVAVRPMTAISGLSSIHEDICTSAHQKRVAMILLPFHKHQ 632


>At1g78540.1 68414.m09154 transcription factor-related weak
           similarity to STAT protein (GI:2230824) and STATc
           protein (GI:13235235) [Dictyostelium discoideum]
          Length = 638

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 520 KIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILP 654
           K+KI   +S S   L W++    + K +P+L +   PI   S+ P
Sbjct: 287 KLKISQLSSNSDDRLFWIKFGIRNAKDYPFLQAVSNPIRCISVSP 331


>At1g60080.1 68414.m06769 3' exoribonuclease family domain
           1-containing protein similar to SP|Q96B26 Exosome
           complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA
           processing protein 43) {Homo sapiens}; contains Pfam
           profile PF01138: 3' exoribonuclease family, domain 1
          Length = 302

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 275 IKHVTLSLN-VDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTY 439
           +K++  SL  +  +N +L    T +  ++  +  VVLDSS+  +   +  GA L Y
Sbjct: 219 LKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAY 274


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 589 SGKKHPYLFSQCQPIHARSILPCQDTPFVKFTY 687
           +G+K     +Q +P  AR   PC D P  K T+
Sbjct: 126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATF 158


>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 299 NVDFENKVLNGSATLDVDVLQDIGDVVLDSSELT 400
           ++DF N  LNG+ T D+  L  +  + L ++ LT
Sbjct: 434 SIDFSNFGLNGTITSDIQYLNQLQKLDLSNNNLT 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,517
Number of Sequences: 28952
Number of extensions: 230596
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)