Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120732.seq
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   5.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 131 PPKPMQCWIHPRRANCKVTRPRNN 202
           P   +Q W   RRA C+  + ++N
Sbjct: 109 PESRVQVWFKNRRAKCRQQQKQHN 132


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 652 NLITGEQFYCF 684
           N++TG+QFY F
Sbjct: 394 NILTGDQFYNF 404


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 RCNAGYILDE 170
           RCNAG + DE
Sbjct: 453 RCNAGLVFDE 462


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 131 PPKPMQCWIHPRRANCK 181
           P   +Q W   RRA C+
Sbjct: 167 PESRVQVWFKNRRAKCR 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,109
Number of Sequences: 336
Number of extensions: 3046
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)