Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120732.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   1.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   5.9  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   5.9  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.9  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 399 RRRGWRTQHGRFKDHHRYGHQVHWQTGRRRVHFDSGPMY 515
           R+R    QH  F++H R G  +H  T  +++H +   +Y
Sbjct: 498 RQRLDELQHSIFEEHKRVGSDLHQDT-EKKLHLEQHHLY 535


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 647 GYLEFITNVDTLPAFTIAFCVISFDNVRALRQNNGPKFGI 528
           GYL  +  V   PA   A CV+ F  V  +     P  GI
Sbjct: 425 GYLYLLMGVLVCPAVVPATCVMLFSRVSTIAVTVSPVLGI 464


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 120 LKGVNFTEAQRSNLIGFLVEHI*NNVVI 37
           ++G+N  +    NL+ F VEH+ N+V I
Sbjct: 248 IQGLNCEKGSIGNLLCFAVEHVNNHVEI 275


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 224 NDMLHMTVLNTCF*TSTQN----CIIGTCCATIKPRRE-KQFSTPTTCTS 358
           +D +   +L   F ++TQN      +   CA I+   E K+ STPT C+S
Sbjct: 554 DDKMANGILENAFMSTTQNNNESFAVCLACAIIQRSLERKKLSTPTQCSS 603


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 581 SFDNVRALRQNNGPKFGIN*IDIHGSAIKMYSSSASLPMYLMTVSMMI 438
           SF N R +R NN  +FG   I +  S +    S+A++  YL+  S ++
Sbjct: 214 SFGNARTVRNNNSSRFG-KFIKVEFS-LSGEISNAAIEWYLLEKSRVV 259


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 224 NDMLHMTVLNTCF*TSTQN----CIIGTCCATIKPRRE-KQFSTPTTCTS 358
           +D +   +L   F ++TQN      +   CA I+   E K+ STPT C+S
Sbjct: 554 DDKMANGILENAFMSTTQNNNESFAVCLACAIIQRSLERKKLSTPTQCSS 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,349
Number of Sequences: 5004
Number of extensions: 53019
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)