BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120732.seq (695 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 1.9 SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 27 3.4 SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 26 5.9 SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 5.9 SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 5.9 SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.9 >SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 982 Score = 27.5 bits (58), Expect = 1.9 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 399 RRRGWRTQHGRFKDHHRYGHQVHWQTGRRRVHFDSGPMY 515 R+R QH F++H R G +H T +++H + +Y Sbjct: 498 RQRLDELQHSIFEEHKRVGSDLHQDT-EKKLHLEQHHLY 535 >SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 664 Score = 26.6 bits (56), Expect = 3.4 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -1 Query: 647 GYLEFITNVDTLPAFTIAFCVISFDNVRALRQNNGPKFGI 528 GYL + V PA A CV+ F V + P GI Sbjct: 425 GYLYLLMGVLVCPAVVPATCVMLFSRVSTIAVTVSPVLGI 464 >SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 493 Score = 25.8 bits (54), Expect = 5.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -3 Query: 120 LKGVNFTEAQRSNLIGFLVEHI*NNVVI 37 ++G+N + NL+ F VEH+ N+V I Sbjct: 248 IQGLNCEKGSIGNLLCFAVEHVNNHVEI 275 >SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2|||Manual Length = 673 Score = 25.8 bits (54), Expect = 5.9 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = +2 Query: 224 NDMLHMTVLNTCF*TSTQN----CIIGTCCATIKPRRE-KQFSTPTTCTS 358 +D + +L F ++TQN + CA I+ E K+ STPT C+S Sbjct: 554 DDKMANGILENAFMSTTQNNNESFAVCLACAIIQRSLERKKLSTPTQCSS 603 >SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces pombe|chr 3|||Manual Length = 1526 Score = 25.8 bits (54), Expect = 5.9 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -1 Query: 581 SFDNVRALRQNNGPKFGIN*IDIHGSAIKMYSSSASLPMYLMTVSMMI 438 SF N R +R NN +FG I + S + S+A++ YL+ S ++ Sbjct: 214 SFGNARTVRNNNSSRFG-KFIKVEFS-LSGEISNAAIEWYLLEKSRVV 259 >SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 673 Score = 25.8 bits (54), Expect = 5.9 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = +2 Query: 224 NDMLHMTVLNTCF*TSTQN----CIIGTCCATIKPRRE-KQFSTPTTCTS 358 +D + +L F ++TQN + CA I+ E K+ STPT C+S Sbjct: 554 DDKMANGILENAFMSTTQNNNESFAVCLACAIIQRSLERKKLSTPTQCSS 603 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,647,349 Number of Sequences: 5004 Number of extensions: 53019 Number of successful extensions: 121 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 121 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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