Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120732.seq
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    28   8.1  
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879...    28   8.1  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    28   8.1  

>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/64 (25%), Positives = 22/64 (34%)
 Frame = +2

Query: 173 NCKVTRPRNNYSDPDNENDMLHMTVLNTCF*TSTQNCIIGTCCATIKPRREKQFSTPTTC 352
           + KV RP   +S         HMT   TC  +        TCC ++            TC
Sbjct: 184 SAKVVRPTKFFSQDGRRTTQAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTC 243

Query: 353 TSAC 364
           +  C
Sbjct: 244 SCGC 247


>04_04_1113 -
           30986757-30986780,30986781-30987273,30987437-30987959,
           30988361-30988615,30988812-30988926,30989026-30989078,
           30989213-30989265,30989419-30989473,30989549-30989599,
           30989776-30990024,30990122-30990350,30990994-30991305
          Length = 803

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 609 GQSVDVCNELQISLEFNYGRTVLLFLRT 692
           G  V V   ++ S EF++GRT+ L L+T
Sbjct: 91  GYEVSVAQHIEDSEEFDFGRTMFLALQT 118


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 422 LCSPASSTLLKCSVRIGLINTHSYTSSAL 336
           LC   +ST L C+++   I T S +SS+L
Sbjct: 41  LCGSTNSTSLSCAIQSSNIKTESISSSSL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,308
Number of Sequences: 37544
Number of extensions: 325786
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)