Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120732.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51659| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_18099| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_34084| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_11790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 28   6.3  
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)                   28   6.3  

>SB_51659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 152 WIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNTCF*TSTQNCIIGTCCATIKPRREKQ 331
           W   RR NC VTRP  N +       +    VL+  +    QNC+      T+  R  + 
Sbjct: 37  WYGRRRYNCAVTRPSTNLALLSLTTVIGREPVLSQWYGRRRQNCVRNRFDITVLTRYYQA 96

Query: 332 FSTPTT 349
            + P+T
Sbjct: 97  VTRPST 102


>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +2

Query: 152 WIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNTCF*TSTQNCIIGTCCATIKPRREKQ 331
           W   RR NC VT P  N +     + +    VL+  +    QNC+      T+  R  + 
Sbjct: 37  WYGRRRQNCAVTHPSTNRALLSLTSVIGREPVLSQWYGRRRQNCVRNGFDITVLTRYSEA 96

Query: 332 FSTPTTCTSAC*LNQFV 382
            + P T  +   LN  +
Sbjct: 97  VTHPRTYRALLSLNSVI 113


>SB_18099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +2

Query: 152 WIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNTCF*TSTQNCIIGTCCATIKPRREKQ 331
           W   RR NC VT P  N +     + +    VL+  +    QNC+      T+  R  + 
Sbjct: 37  WYGRRRQNCAVTHPSTNRALLSLTSVIGREPVLSQWYGRRRQNCVRNRFDITVLTRYSEA 96

Query: 332 FSTPTT 349
            + P+T
Sbjct: 97  VTHPST 102


>SB_34084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 400 VDEAGEHNMGVLKIIIDTVIKYIGKLADDE 489
           VD+ GEHNMGV K+  D +   + K+A+D+
Sbjct: 33  VDKVGEHNMGVDKVSEDDI--GVDKVAEDD 60


>SB_11790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +2

Query: 152 WIHPRRANCKVTRPRNNYSDPDNENDMLHMTVLNTCF*TSTQNCIIGTCCATIKPRREKQ 331
           W   RR NC VT P  N +       +    VL+  +    QNC+      T+  R  + 
Sbjct: 46  WYGRRRYNCAVTHPSTNRALLSLTTVIGREPVLSQWYGRRRQNCVRNRFDITVLTRYYQA 105

Query: 332 FSTPTT 349
            + P+T
Sbjct: 106 VTRPST 111


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  LCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDP 214
           +C S   +  +PM P   +  W+  RRA    TRP  NY+ P
Sbjct: 40  VCHSRHRSTIRPMVPGGLLSMWLLERRAPTHKTRP--NYTSP 79


>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
          Length = 677

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 403 DEAGEHNMGVLKIIIDTVIKYIGKLADDEYILIADPCMSI*FIPNLGPL 549
           +E G+H       I   +I Y+G +  D+   I DP +++ +     P+
Sbjct: 127 EEKGKHKDPSAVFIASIIIDYVGVVVQDKVSYICDPTLNVLYATEKPPV 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,962,587
Number of Sequences: 59808
Number of extensions: 401658
Number of successful extensions: 1001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)