Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120732.seq
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D49728-1|BAA08565.1|  598|Homo sapiens DNA binding protein protein.    31   3.0  
CR456704-1|CAG32985.1|  598|Homo sapiens NR4A1 protein.                31   3.0  
BT007144-1|AAP35808.1|  598|Homo sapiens nuclear receptor subfam...    31   3.0  
BC016147-1|AAH16147.1|  598|Homo sapiens nuclear receptor subfam...    31   3.0  
AK131566-1|BAD18699.1|  652|Homo sapiens protein ( Homo sapiens ...    31   3.0  

>D49728-1|BAA08565.1|  598|Homo sapiens DNA binding protein protein.
          Length = 598

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 486 RVHFDSGPMYVDLIYSEFRAIILPQSAYIIKGD 584
           R H DSGP    L YS+F+ ++LP       GD
Sbjct: 370 RAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGD 402


>CR456704-1|CAG32985.1|  598|Homo sapiens NR4A1 protein.
          Length = 598

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 486 RVHFDSGPMYVDLIYSEFRAIILPQSAYIIKGD 584
           R H DSGP    L YS+F+ ++LP       GD
Sbjct: 370 RAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGD 402


>BT007144-1|AAP35808.1|  598|Homo sapiens nuclear receptor subfamily
           4, group A, member 1 protein.
          Length = 598

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 486 RVHFDSGPMYVDLIYSEFRAIILPQSAYIIKGD 584
           R H DSGP    L YS+F+ ++LP       GD
Sbjct: 370 RAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGD 402


>BC016147-1|AAH16147.1|  598|Homo sapiens nuclear receptor subfamily
           4, group A, member 1 protein.
          Length = 598

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 486 RVHFDSGPMYVDLIYSEFRAIILPQSAYIIKGD 584
           R H DSGP    L YS+F+ ++LP       GD
Sbjct: 370 RAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGD 402


>AK131566-1|BAD18699.1|  652|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16818 fis, clone TRACH1000193, highly  similar
           to Orphan nuclear receptor HMR. ).
          Length = 652

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 486 RVHFDSGPMYVDLIYSEFRAIILPQSAYIIKGD 584
           R H DSGP    L YS+F+ ++LP       GD
Sbjct: 424 RAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGD 456


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,273,002
Number of Sequences: 237096
Number of extensions: 1655091
Number of successful extensions: 3480
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3478
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)