Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120732.seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical ...    30   1.4  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    29   4.2  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine r...    28   7.3  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical
           protein Y73B3A.16 protein.
          Length = 277

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 626 NVDTLPAFTIAFCVISFDNVRALRQNNGPKFGI 528
           NV  +   T   CV+ F N R +RQ+  PK+ +
Sbjct: 111 NVCFIQPSTFHVCVVDFGNARTIRQDKPPKYAL 143


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 209  DPDNENDMLHMTVLNTCF*TSTQNCIIGTCCATIKPRREKQFSTPTTC 352
            +P N+ D+  ++   T   +STQ CI G C      RR    S   TC
Sbjct: 2262 EPANQQDLSDVSSCVTPCDSSTQLCISGECICKSGFRRNSTLSGSETC 2309


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 486 RVHFDSGPMYVDLIYSEFRAIILPQSAYIIKGDYAESDSESGQSVDVCNELQISLEFNY 662
           R  FD  P   DL     R ++  +  ++IK    E+  E G  +D+ NE+   L+FNY
Sbjct: 393 RWEFDIDPDSEDLEGLHLRVVVYLEEPFVIKT--GENQYE-GFCIDLLNEMTQVLKFNY 448


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 590 CVISFDNVRALRQNNGPKFGI 528
           CV+ F N R +RQ+  PK+ +
Sbjct: 561 CVVDFGNARTIRQDKPPKYAL 581


>AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein5 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = -1

Query: 506 SAIKMYSSSASLPMYLMTVSMMIFKTPM 423
           S + + S+S S+P+Y++   ++IFK+P+
Sbjct: 15  STLHIISTSISVPIYIVAFWILIFKSPV 42


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 471 QTGRRRVHFDSGPMYVDLIYSEFRAIILP 557
           +T R RVHFD   + VD++ S F    +P
Sbjct: 481 ETKRNRVHFDEESVPVDVVLSSFTLQQIP 509


>AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical
           protein T12B5.10 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 262 LNEHA-KLYYRHLLRNDQAEARKTILNADDVYECVLIKPIRTEHFRSVDE 408
           L++HA K+  R+   N + +  KT     +  +C+L+K IR  HF S DE
Sbjct: 155 LSKHARKIDIRNFTEN-RRDIIKTFNEIWNTEKCILVKEIRLRHF-SFDE 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,505
Number of Sequences: 27780
Number of extensions: 304059
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)