Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120731.seq
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 679 LSPSPGGASHPRIVI 635
           L+PSPG  SHP  VI
Sbjct: 117 LTPSPGPPSHPYTVI 131


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 82  ILYFRLELFENSQYLDNFCQNYSINSILIIQFK 180
           ++ + LELF  ++ + + CQ  +    LI++ K
Sbjct: 296 VVLYGLELFILAKIVTDLCQEANSTKKLIVKIK 328


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 79  MILYFRLELFENSQYLDNFCQNY 147
           ++ +  LEL +  +  DNFC  Y
Sbjct: 153 VLRFHLLELEKVHELCDNFCHRY 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,480
Number of Sequences: 336
Number of extensions: 3571
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)