Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120731.seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 29   4.7  
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_11432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 599 PTNSPITET*QISKKAIPAVVTGKFFPSK 513
           PTNSP+T T        P V T  FFP++
Sbjct: 253 PTNSPVTPTFTFPGPVNPTVPTQHFFPAQ 281


>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/69 (21%), Positives = 35/69 (50%)
 Frame = -3

Query: 474 HRIQSVWELILVTIFVLK*HNTSSMWQAVLSIRLKLKHRHILQALK*LLLFIVYVNNED* 295
           HR+    + +++ I + + H   S +  ++ IR    H H+ ++ K  ++ I Y N+++ 
Sbjct: 149 HRLLKSSKSVIIFIIIYRNHRNPSSFIKIIKIRHHHHHHHLSKSSK-SVIIIAYQNHQNP 207

Query: 294 CYSINCSVK 268
             S +  +K
Sbjct: 208 LSSSSSFIK 216


>SB_11432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 653 SPSYSNQILHRFPITYIVPTNSPITET*QISKK 555
           S SY   +L RF +TYI+P  + +T    I  K
Sbjct: 185 SQSYMTYLLFRFAVTYIIPVLTMLTSYGSIGLK 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,921
Number of Sequences: 59808
Number of extensions: 361064
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)