Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120731.seq
(689 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excisi... 32 1.7
BC080532-1|AAH80532.1| 871|Homo sapiens MMS19 protein protein. 32 1.7
BC006575-1|AAH06575.2| 803|Homo sapiens MMS19L protein protein. 32 1.7
AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homol... 32 1.7
AL359388-2|CAI14190.1| 299|Homo sapiens MMS19-like (MET18 homol... 32 1.7
AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homol... 32 1.7
AL355490-23|CAI40792.1| 885|Homo sapiens MMS19-like (MET18 homo... 32 1.7
AL355490-2|CAI40771.1| 299|Homo sapiens MMS19-like (MET18 homol... 32 1.7
AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homol... 32 1.7
AK027710-1|BAB55315.1| 774|Homo sapiens protein ( Homo sapiens ... 32 1.7
AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein. 32 1.7
AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional coactiv... 32 1.7
AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein. 32 1.7
>BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excision
repair homolog (S. cerevisiae) protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
>BC080532-1|AAH80532.1| 871|Homo sapiens MMS19 protein protein.
Length = 871
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 105 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 143
>BC006575-1|AAH06575.2| 803|Homo sapiens MMS19L protein protein.
Length = 803
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 36 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 74
>AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
>AL359388-2|CAI14190.1| 299|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 299
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 254 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 292
>AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
>AL355490-23|CAI40792.1| 885|Homo sapiens MMS19-like (MET18
homolog, S. cerevisiae) protein.
Length = 885
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 216 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 254
>AL355490-2|CAI40771.1| 299|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 299
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 254 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 292
>AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
>AK027710-1|BAB55315.1| 774|Homo sapiens protein ( Homo sapiens
cDNA FLJ14804 fis, clone NT2RP4001638, weakly similar to
DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19. ).
Length = 774
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 105 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 143
>AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
>AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional
coactivator MMS19 protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
>AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein.
Length = 1030
Score = 32.3 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LVKYVDVLILTLSIKLLATLNLCCAI*GRKL*LKLIPKL 461
L++ VD +L+ + L TLN CCA+ G+K +P L
Sbjct: 263 LIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSL 301
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,800,020
Number of Sequences: 237096
Number of extensions: 1665279
Number of successful extensions: 2517
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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