Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120731.seq
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z75547-4|CAA99900.1|  201|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AC024804-8|AAF60745.1|  319|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.1 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +1

Query: 109 ENSQYLDNFC----QNYSINSILIIQFKCYNFRSF*EYTIKNNMLMLSYFSFI 255
           +   ++  FC      +SI     +QFK +N   + EY+ KN M+ ++ F  I
Sbjct: 35  KTKHFIREFCIFKASRFSIELNQSVQFKMFNNGRWSEYSFKNGMICITSFGII 87


>Z75547-4|CAA99900.1|  201|Caenorhabditis elegans Hypothetical
           protein R11D1.3 protein.
          Length = 201

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 267 ALQSNLLNSINPHYLRIL*IVTTISKLVKYVDVLILTLSIKLLATLNLC 413
           +L SN  N +NP  L      T ++KL+  ++ L   L  K+ ATLN C
Sbjct: 85  SLYSNANNCLNPDSLD-----TVVTKLIGPIETLTAALVKKIKATLNDC 128


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 490  LFF*FASYTVSLGINFS-YNFRPQIAQHKFNVASSFIDKVKIKTSTYFTSFE 338
            LF  +AS   S+ I  S + F P I  H   + +SF+    +   T FTSFE
Sbjct: 926  LFILYASLLYSVTILMSTFFFLPIIFTHSQTILTSFLHIPVLFLGTLFTSFE 977


>AF025469-4|AAG00032.1|  270|Caenorhabditis elegans Hypothetical
           protein W09B6.5 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 559 KRLYLLLLQANSFHPKRYTVKTYLFF*FASYTVSLGINFSYNFRPQIAQH 410
           K+  L + Q   F  K +  + + FF    Y ++L   FS+ F+P   QH
Sbjct: 219 KKNCLKIFQKKFFLAKNFYFQIFNFFIANQYLITLIYTFSHFFQPTKFQH 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,900
Number of Sequences: 27780
Number of extensions: 293827
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)