Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120731.seq
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.2  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 293 H*SSLFTYTMNSNNYFKACKICRCFNFNLIDK 388
           H ++ + Y  N+NNY   CK    +N N I++
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKL-YYNINYIEQ 121


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 293 H*SSLFTYTMNSNNYFKACKICRCFNFNLIDK 388
           H ++ + Y  N+NNY   CK    +N N I++
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKL-YYNINYIEQ 121


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 293 H*SSLFTYTMNSNNYFKACKICRCFNFNLIDK 388
           H ++ + Y  N+NNY   CK    +N N I++
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKL-YYNINYIEQ 121


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 293 H*SSLFTYTMNSNNYFKACKICRCFNFNLIDK 388
           H ++ + Y  N+NNY   CK    +N N I++
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKL-YYNINYIEQ 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,556
Number of Sequences: 438
Number of extensions: 3666
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)