Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120731.seq
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17080.1 68418.m02001 cathepsin-related contains weak similar...    32   0.31 
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    28   5.1  
At1g01420.1 68414.m00057 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.7  
At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SD...    27   8.9  
At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative si...    27   8.9  

>At5g17080.1 68418.m02001 cathepsin-related contains weak similarity
           to Cathepsin L (EC 3.4.22.15) (Progesterone-dependent
           protein) (PDP) (Fragment) (Swiss-Prot:P25773) [Felis
           silvestris catus]
          Length = 298

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 451 INFSYNFRPQIAQHKFNVASSFIDKVKIK 365
           + F+YN    IAQH F    SF +KVK+K
Sbjct: 105 LEFTYNMNRPIAQHMFLDIDSFAEKVKLK 133


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 464 CIRCKLKK*ICLNGIPFWMERIC 532
           C  CK KK    N  PFW ER C
Sbjct: 345 CYVCKEKKMKTYNNHPFWEERYC 367


>At1g01420.1 68414.m00057 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 626 HRFPITYIVPTNSPITET*QISKKAIPAVVTGKFFP 519
           H F +T+I+P +SP ++  +    ++P+ +   F P
Sbjct: 34  HGFTVTFIIPGDSPPSKAQRSVLNSLPSSIASVFLP 69


>At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 326

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 653 SPSYSNQILHRFPITYIVPTNSPITET*QISKKAIPAVVTGKF 525
           +P +  +   R  +T I+  +S   ET +++KKA+  +  G F
Sbjct: 223 TPGFEEEQKSRPEVTAIIAASSGSMETEEVAKKAMDGIKAGNF 265


>At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative
           similar to NhaD [Vibrio parahaemolyticus]
           gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
           member, PMID:11500563
          Length = 420

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 164 LLFNLNVIIFVLSKSIQSKITC*CYLISVSLWSLRFTEQFIE 289
           LLF +  ++ +  +S+    +    L++VSLW +R  E  +E
Sbjct: 3   LLFGIGYVLIIFEESLSFSKSGIALLMAVSLWVVRSIETSVE 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,236
Number of Sequences: 28952
Number of extensions: 249808
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)