Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120726.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    30   0.36 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    29   0.48 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.4  
SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   7.9  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    25   7.9  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 249 TRLQFFQLKLSSYLLYFDFAISIS*YI-KFDISFDYICSKIFNLLCIHTFLMYFSHI 82
           T   FFQ+ +SS+L  F         + K   S D     +F+LLC H F + F+ I
Sbjct: 92  THTLFFQISISSFLCRFSNCSEDEIRLFKQHQSLDSFLLSLFDLLCSHHFSVEFTSI 148


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 307 KKTELRECKNQKSKINPKRKNKFGDI*LK*SKKED 411
           KK  L E K +K+K+ PK K K     +  S K+D
Sbjct: 83  KKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQD 117


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 166 IRHFFRLYL-FKNLQLIMYSYFSHVLQSHLRKC 71
           I HF + Y+   + Q+I     S+ ++SHLRKC
Sbjct: 99  ISHFMQKYIKVWSYQIIPEPTISNSIESHLRKC 131


>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 44

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 231 QLKLSSYLLYFDFAISIS*YIKFDISFDYICSKIFNL 121
           ++ L   ++YF   ISIS  +     F ++C+K+ NL
Sbjct: 8   EVGLPGMIIYFLLQISISRCVFSKNGFYHVCNKMINL 44


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 229 LKKLQSSHL*RKKVRGREEKTI*RM*KKTELRECKNQK 342
           +K+LQS     K+V GR E+ I R+ + TE+ + KN K
Sbjct: 124 IKRLQSHW---KQVLGRWEENIARVDRLTEIDKTKNAK 158


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 QRREDNMKNVKED*IKRM*KPEKQNKSQEKK 368
           QRRE+N+K  +E    +  K  K+ K  +KK
Sbjct: 203 QRREENLKKRRESKKSKKGKAPKKKKPSKKK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,578
Number of Sequences: 5004
Number of extensions: 37728
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)