Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120726.seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0079 + 644754-645932,645966-646061,646193-647122                 29   2.6  
11_01_0078 + 609005-610183,610217-610312,610444-611373                 29   2.6  
06_01_1022 + 7992901-7994676                                           29   3.5  
04_01_0099 + 1029785-1030039,1030269-1030357,1030484-1030541,103...    28   6.1  

>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +3

Query: 231 EKIAIESFITKKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEE-R 407
           +++A E     K++  R E   +  +E   KR+ + EK+   +E++  R  + ++VEE R
Sbjct: 194 KRLAKEGENGAKAEESRVEKAKRKAEE---KRLARLEKEMLEEEERKQREEMAKLVEERR 250

Query: 408 RLRKTKINHEIKASKKATATG 470
           RLR  K   E + SK AT  G
Sbjct: 251 RLRDEKAEAE-ERSKGATPVG 270


>11_01_0078 + 609005-610183,610217-610312,610444-611373
          Length = 734

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +3

Query: 231 EKIAIESFITKKSKGQRREDNMKNVKED*IKRM*KPEKQNKSQEKK*IRGYLTEVVEE-R 407
           +++A E     K++  R E   +  +E   KR+ + EK+   +E++  R  + ++VEE R
Sbjct: 194 KRLAKEGENGAKAEESRVEKAKRKAEE---KRLARLEKEMLEEEERKQREEMAKLVEERR 250

Query: 408 RLRKTKINHEIKASKKATATG 470
           RLR  K   E + SK AT  G
Sbjct: 251 RLRDEKAEAE-ERSKGATPVG 270


>06_01_1022 + 7992901-7994676
          Length = 591

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 171 IKFDISFDYICSKIFNLLCIHTFLMYFS 88
           ++ DI F+Y+ +++  LLC+  F ++F+
Sbjct: 157 VEKDIRFNYLWTRLIKLLCVTLFALHFA 184


>04_01_0099 +
           1029785-1030039,1030269-1030357,1030484-1030541,
           1030643-1030960,1031043-1031165,1031698-1031901,
           1031982-1032041
          Length = 368

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -3

Query: 171 IKFDISFDYICSKIFNLLCIHTFLMYFS 88
           ++ D+ F Y+ +++  LLC+  F ++F+
Sbjct: 116 VEKDVRFSYLWTRLIKLLCVTLFALHFA 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,062,725
Number of Sequences: 37544
Number of extensions: 185953
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)